From 393f79e07052438de27fbd30905efcd5c53d7d6d Mon Sep 17 00:00:00 2001
From: Kunzmann
 <kunzmann@standard-st-compute-resources-sm-1.hpc-cluster.pcluster>
Date: Fri, 7 Jul 2023 12:48:57 +0000
Subject: [PATCH] added r proj infrastructure and a first json file describing
 an individual test case

---
 .gitignore           |  4 ++++
 rmes.Rproj           | 13 +++++++++++++
 tests/testCase1.json | 16 ++++++++++++++++
 3 files changed, 33 insertions(+)
 create mode 100644 .gitignore
 create mode 100644 rmes.Rproj
 create mode 100644 tests/testCase1.json

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..5b6a065
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,4 @@
+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
diff --git a/rmes.Rproj b/rmes.Rproj
new file mode 100644
index 0000000..8e3c2eb
--- /dev/null
+++ b/rmes.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
diff --git a/tests/testCase1.json b/tests/testCase1.json
new file mode 100644
index 0000000..242420e
--- /dev/null
+++ b/tests/testCase1.json
@@ -0,0 +1,16 @@
+{
+  "type": "TestCase",
+  "uuid": "4fa03a8d-2e39-4866-9cd3-69b77bd78a6b",
+  "testName": "t test produces calibrated p values",
+  "keywords": ["t-test", "p value", "statistics"],
+  "description": "This test checks that the p values produced by stats::t.test do not deviate substantially from the expected uniform distribution.",
+  "references:" "",
+  "code": "set.seed(42)\nm <- 100\nfor (n in c(5, 50, 500)) {\n# repeatedly sample data under null and record p value\nres <- numeric(m)\nfor (i in 1:m) {\nres[i] <- t.test(rnorm(n))$p.value\n}\n# expect non significant result\nexpect_true(\nks.test(res, 'punif')$p.value > 0.05\n)\n}",
+  "output": "",
+  "environment": {
+    "container": "rocker/tidyverse:4.3.1",
+    "runtime": "singularity",
+    "runtimeVersion": "3.8",
+    "renvLockfile": ""
+  }
+}
\ No newline at end of file