build.xml

<project name="Gene Family Service" default="compile" basedir=".">

  <description>
      Build war-file for the Gene Families (Domain) Service
  </description>

  <!-- set global properties for this build -->
  <property name="src" location="src"/>
  <property name="dist" location="dist"/>
  <property name="classes" location="classes"/>
  <property name="jar.file" value="KBaseGeneFamilies.jar"/>
  <property name="service" value="service"/>
  <property name="war.file" value="KBaseGeneFamilies.war"/>
  <property name="war" value="war"/>
  <property name="war.lib" value="${war}/lib"/>
  <property name="docs" value="docs/javadoc"/>
  <property name="jarsdir" value="../jars/lib/jars"/>
  <property name="bindir" value="data/bin/"/>
  <property name="deploycfg" value="./"/>

  <fileset dir="${jarsdir}" id="serverlib">
    <include name="ini4j/ini4j-0.5.2.jar"/>
    <include name="jetty/jetty-all-7.0.0.jar"/>
    <include name="jna/jna-3.4.0.jar"/>
    <include name="servlet/servlet-api-2.5.jar"/>
    <include name="syslog4j/syslog4j-0.9.46.jar"/>
    <include name="junit/junit-4.9.jar"/>
    <include name="strbio/strbio-1.3.jar"/>
    <include name="kbase/auth/kbase-auth-1398468950-3552bb2.jar"/>
    <include name="jackson/jackson-annotations-2.2.3.jar"/>
    <include name="jackson/jackson-core-2.2.3.jar"/>
    <include name="jackson/jackson-databind-2.2.3.jar"/>
    <include name="kbase/kbase-common-temp.jar" />
    <include name="kbase/shock/shock-client-0.0.8.jar" />
    <include name="kbase/workspace/WorkspaceClient-0.2.0.jar"/>
    <include name="kbase/genomes/kbase-genomes-20140411.jar"/>
    <include name="apache_commons/commons-logging-1.1.1.jar"/>
    <include name="apache_commons/http/httpclient-4.3.1.jar"/>
    <include name="apache_commons/http/httpcore-4.3.jar"/>
    <include name="apache_commons/http/httpmime-4.3.1.jar"/>
    <include name="apache_commons/commons-codec-1.8.jar"/>
    <include name="apache_commons/commons-io-2.4.jar"/>
    <include name="apache_commons/commons-lang3-3.1.jar"/>
  </fileset>

  <path id="compile.classpath">
    <fileset refid="serverlib"/>
  </path>

  <path id="test.classpath">
    <path refid="compile.classpath"/>
    <pathelement path="${classes}"/>
  </path>

  <target name="init" description="make directories">
    <!-- Create the output directory structure-->
    <mkdir dir="${classes}"/>
    <mkdir dir="${dist}"/>
  </target>

  <target name="compile" depends="init" description="compile the source">
    <!-- Compile class files-->
    <javac destdir="${classes}" includeantruntime="false" target="1.7" source="1.7" debug="true" classpathref="compile.classpath">
      <src path="${src}"/>
    </javac>
    <!-- Copy resource files-->
    <copy todir="${classes}">
      <fileset dir="${deploycfg}">
	<include name="*.properties"/>
      </fileset>
      <fileset dir="${bindir}">
	<include name="*"/>
      </fileset>
    </copy>
    <unzip dest="${classes}">
        <fileset refid="serverlib"/>
    </unzip>
    <jar destfile="${dist}/${jar.file}" basedir="${classes}">
      <manifest>
        <attribute name="Main-Class" value="us.kbase.kbasegenefamilies.prepare.DomainModelLibPreparation"/>
      </manifest>
    </jar>
  </target>

  <target name="war" depends="compile" description="build the WAR file. Assumes compile has been run">
    <!-- make the war file for the server-->
    <mkdir dir="${war}"/>
    <copy todir="${war}/" flatten="true">
      <resources>
        <file file="${service}/web.xml"/>
      </resources>
    </copy>
    <mkdir dir="${war.lib}"/>
    <copy todir="${war.lib}/" flatten="true">
      <fileset refid="serverlib"/>
      <resources>
        <file file="${dist}/${jar.file}"/>
      </resources>
    </copy>
    <war destfile="${dist}/${war.file}" webxml="${war}/web.xml">
      <lib dir="${war.lib}"/>
    </war>
    <delete dir="${war.lib}"/>
    <delete dir="${war}"/>
  </target>

  <target name="javadoc" description="build javadocs">
    <javadoc access="protected" author="false" classpathref="compile.classpath"
      destdir="${docs}" nodeprecated="false" nodeprecatedlist="false"
      noindex="false" nonavbar="false" notree="false"
      source="1.7" splitindex="true" use="true" version="true"
      packagenames="us.kbase.kbasegenefamilies.*" sourcepath="${src}">
      <link href="http://download.oracle.com/javase/7/docs/api/"/>
      <link href="http://fasterxml.github.io/jackson-core/javadoc/2.2.0/"/>
      <link href="http://fasterxml.github.io/jackson-databind/javadoc/2.2.0/"/>
    </javadoc>
  </target>

  <target name="preparejunitreportdir" if="env.JENKINS_REPORT_DIR">
    <delete dir="${env.JENKINS_REPORT_DIR}"/>
    <mkdir dir="${env.JENKINS_REPORT_DIR}"/>
  </target>

  <target name="test" depends="compile, preparejunitreportdir" description="Testing gene families service">
    <junit fork="yes" maxmemory="3G" haltonfailure="yes">
      <classpath refid="test.classpath"/>
      <formatter type="plain" usefile="false" />
      <formatter type="xml" usefile="true" if="env.JENKINS_REPORT_DIR"/>
      <batchtest todir="${env.JENKINS_REPORT_DIR}">
        <fileset dir="${src}">
          <include name="**/test/**/**Test.java"/>
        </fileset>
      </batchtest>
    </junit>
    <fail message="Test failure detected, check test results." if="test.failed" />
  </target>

  <target name="clean" description="clean up" >
    <!-- Clean up internal temporary files and folders-->
    <delete dir="${classes}"/>
    <delete dir="${dist}"/>
    <!--<delete dir="${test}"/>-->
  </target>
</project>