base) %vjc> conda activate kipoi-AttentiveChrome
(kipoi-AttentiveChrome) %vjc> kipoi get-example AttentiveChrome/E003 -o example_file
INFO [kipoi.sources] Update /home/vincent/.kipoi/models/
Already up to date.
Downloading https://zenodo.org/record/2640883/files/test.csv?download=1 to /home/vincent/example_file/input_file
24.6kB [00:01, 18.1kB/s]
INFO [kipoi.cli.main] Example files downloaded to: example_file
INFO [kipoi.cli.main] use the following dataloader kwargs:
{"input_file": "example_file/input_file"}
(kipoi-AttentiveChrome) %vjc> kipoi predict AttentiveChrome/E003 --dataloader_args='{"input_file": "example_file/input_file", "bin_size": 100}' -o example_predict.tsv
INFO [kipoi.sources] Update /home/vincent/.kipoi/models/
Already up to date.
INFO [kipoi.data] Using user specified dataloader from GitSource(remote_url='https://github.com/kipoi/models.git', local_path='/home/vincent/.kipoi/models/', auto_update=True, use_lfs=False)
INFO [kipoi.data] successfully loaded the dataloader AttentiveChrome/E003/.. from /home/vincent/.kipoi/models/AttentiveChrome/dataloader.HMData
INFO [kipoi.model] Downloading model arguments weights from https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:00, ?B/s]Waiting 0.1 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:01, ?B/s]
Waiting 0.2 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:01, ?B/s]
Waiting 0.4 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:01, ?B/s]
Waiting 0.8 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:01, ?B/s]
Waiting 1.6 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:02, ?B/s]
Waiting 3.2 seconds before retrying.
Downloading https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 to /home/vincent/.kipoi/models/AttentiveChrome/downloaded/model_files/E003/weights/9b4ff730ac5e70265f7a78162fa76768
0.00B [00:04, ?B/s]
Traceback (most recent call last):
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/bin/kipoi", line 8, in <module>
sys.exit(main())
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/lib/python3.8/site-packages/kipoi/__main__.py", line 107, in main
command_fn(args.command, sys.argv[2:])
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/lib/python3.8/site-packages/kipoi/cli/main.py", line 252, in cli_predict
model = kipoi.get_model(args.model, args.source, **{"default_dataloader_name": args.dataloader})
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/lib/python3.8/site-packages/kipoi/model.py", line 175, in get_model
path = md.args[k].get_file(os.path.join(output_dir, fname))
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/lib/python3.8/site-packages/kipoi/specs.py", line 528, in get_file
download_url(self.url, root, filename, file_hash)
File "/home/vincent/miniforge3/envs/kipoi-AttentiveChrome/lib/python3.8/site-packages/kipoi_utils/external/torchvision/dataset_utils.py", line 83, in download_url
raise Exception(output)
Exception: Can not download https://zenodo.org/api/files/2bf982b6-143f-49f6-b9ad-1b1e60f67292/E003_attchrome_avgAUC_model.pt?download=1 - FORBIDDEN
0.00B [00:00, ?B/s]
(kipoi-AttentiveChrome) %vjc>
