docker4seq/NAMESPACE at master · kendomaniac/docker4seq · GitHub

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# Generated by roxygen2: do not edit by hand

export(CIRCexplorer2)
export(annoByGtfchipseq)
export(anovaLike)
export(bowtie2)
export(bowtie2Index)
export(bwa)
export(bwaIndex)
export(bwaIndexUcsc)
export(cdhit)
export(chipseq)
export(chipseqCounts)
export(circrnaAnnotations)
export(circrnaBSJunctions)
export(circrnaClassification)
export(circrnaMergePredictions)
export(circrnaOverlapResults)
export(circrnaPrepareFiles)
export(circrnaQuantification)
export(circrnaReformat)
export(ciri2)
export(ciriAS)
export(cutadapt)
export(deeptoolBwig)
export(demultiplexing)
export(dockerTest)
export(downloadContainers)
export(experimentPower)
export(fastq2fasta)
export(fastqc)
export(filterCounts)
export(gatkDNA)
export(getInfo)
export(hashclone)
export(heatmapBase)
export(heatmaply)
export(kraken)
export(macs2)
export(mergeData)
export(mirnaCounts)
export(mirnaCovar)
export(multiQC)
export(oncosnp)
export(oncosnpAnnotation)
export(pca)
export(platypus)
export(platypusFilter)
export(prepare4expands)
export(pubmedNet)
export(rnaseqCounts)
export(rsemBw)
export(rsemanno)
export(rsemannoByGtf)
export(rsemstar)
export(rsemstarIndex)
export(rsemstarUscsIndex)
export(runDocker)
export(salmonAnnotation)
export(salmonCounts)
export(salmonIndex)
export(sample2experiment)
export(sampleSize)
export(skeleton)
export(skewer)
export(skewerXSergio)
export(sncRNA)
export(snvPreprocessing)
export(sraDownload)
export(star)
export(star2steps)
export(starChimeric)
export(starChipIndex)
export(starchipCircle)
export(testSeqbox)
export(trimFasta)
export(wrapperCiri)
export(wrapperDeseq2)
export(wrapperPdx)
export(wrapperSTARChip)
export(wrapperSalmon)
export(xenome)
export(xenomeIndex)
import(utils)