run-tests.yaml

on:
  push:
    branches:
      - master
    paths:
      - 'package.json'
      - 'src/**'
      - 'tests/**'
  pull_request:
    paths:
      - 'package.json'
      - 'src/**'
      - 'tests/**'

name: Run tests

jobs:
  setup-r:
    runs-on: ubuntu-latest
    container: bioconductor/bioconductor_docker:devel

    steps:
      - name: Checkout repo
        uses: actions/checkout@v4

      - name: Set directories
        run: |
          echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV

      - name: Restore the package directory
        uses: actions/cache@v3
        with:
          path: ${{ env.R_PKG_DIR }}
          key: check-packages

      - name: Install dependencies
        shell: Rscript {0}
        run: |
          BiocManager::install("alabaster.sce")

      - name: Build test objects
        run: |
          find tests -name "*.R" -exec R -f {} \;

      - name: Upload test files
        uses: actions/upload-artifact@v3
        with:
          name: test-files
          path: objects

  test-js:
    runs-on: ubuntu-latest
    needs: setup-r
    steps:
      - uses: actions/checkout@v4

      - name: Set up Node
        uses: actions/setup-node@v3
        with:
          node-version: 20
 
      - name: Restore the node modules
        uses: actions/cache@v3
        with:
          path: '**/node_modules'
          key: modules-${{ hashFiles('**/package.json') }}

      - name: Download test files
        uses: actions/download-artifact@v3
        with:
          name: test-files
          path: objects

      - name: Install packages
        run: npm i --include-dev

      - name: Run tests
        run: npm run test