Project management with RStudio by Software Carpentry
Version Control with Git by Software Carpentry
Initial steps toward reproducible research by Karl Broman
The Plain Person’s Guide to Plain Text Social Science by Kieran Healy
R code style guide by Hadley Wickham
The tidyverse style guide by Hadley Wickham
Code Style by the Hitchhiker's Guide to Python
Teach the tidyverse to beginners by David Robinson
A survey on literate programming
Literate programming by Donald E. Knuth (the creator of the TeX computer typesetting system)
How to Share Data with a Statistician by Jeff Leek
Jupyter, Mathematica, and the Future of the Research Paper by Paul Romer