LitReviewR.bib

@Manual{R_software,
	title = {\texttt{R}: A Language and Environment for Statistical Computing},
	author = {{\texttt{R} Core Team}},
	organization = {\texttt{R} Foundation for Statistical Computing},
	address = {Vienna},
	year = {2018},
	url = {https://www.R-project.org/},
}

@Article{R_animation,
    title = {{animation}: An \texttt{R} package for creating animations and demonstrating stat\-ist\-ical methods},
    author = {Yihui Xie},
    journal = {Journal of Statistical Software},
    year = {2013},
    volume = {53},
    number = {1},
    pages = {1--27},
    url = {http://www.jstatsoft.org/v53/i01/},
  }

@Article{R_ape,
	title = {{APE}: Analyses of phylogenetics and evolution in \texttt{R} language},
	author = {E. Paradis and J. Claude and K. Strimmer},
	journal = {Bioinformatics},
	year = {2004},
	volume = {20},
	pages = {289-290},
}

@Manual{R_broom,
    title = {broom: Convert Statistical Analysis Objects into Tidy Tibbles},
    author = {David Robinson and Alex Hayes},
    year = {2018},
    note = {\texttt{R} package version 0.5.0. Available from \url{https://CRAN.R-project.org/package=broom}},
    url = {https://CRAN.R-project.org/package=broom},
  }

@Manual{R_CCA,
	title = {CCA: Canonical Correlation Analysis},
	author = {Ignacio Gonz\'{a}lez and S\'{e}bastien D\'{e}jean},
	year = {2012},
	note = {\texttt{R} package version 1.2. Available from \url{https://CRAN.R-project.org/package=CCA}}
}

 @Manual{R_devtools,
	title = {devtools: Tools to Make Developing R Packages Easier},
	author = {Hadley Wickham and Winston Chang},
	year = {2017},
	note = {\texttt{R} package version 1.13.6. Available from \url{https://CRAN.R-project.org/package=devtools}},
}

@Manual{R_dplyr,
	title = {dplyr: A Grammar of Data Manipulation},
	author = {Hadley Wickham and Romain Francois and Lionel Henry and Kirill M{\"u}ller},
	year = {2017},
	note = {\texttt{R} package version 0.7.6. Available from \url{https://CRAN.R-project.org/package=dplyr}},
}

@Manual{R_EFDR,
    title = {EFDR: Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images},
    author = {Andrew Zammit-Mangion and Hsin-Cheng Huang},
    url = {https://CRAN.R-project.org/package=EFDR},
    year = {2015},
    note = {\texttt{R} package version 0.1.1. Available from \url{https://CRAN.R-project.org/package=EFDR}}
}


@Manual{R_expm,
	title = {expm: Matrix Exponential, Log, ``etc''},
	author = {Vincent Goulet and Christophe Dutang and Martin Maechler and David Firth and Marina Shapira and Michael Stadelmann},
	year = {2017},
	note = {\texttt{R} package version 0.999-2. Available from \url{https://CRAN.R-project.org/package=expm}},
}

@Manual{R_fields,
	title = {fields: Tools for spatial data},
	author = {Nychka, D and Furrer, R and Paige, J and Sain, S},
	note = {\texttt{R} package version 9.6. Available from \url{www.image.ucar.edu/fields}},
	year = {2015}
}

 @Manual{R_FRK,
	title = {FRK: Fixed Rank Kriging},
	author = {Andrew Zammit-Mangion},
	year = {2018},
	note = {\texttt{R} package version 0.2.2. Available from \url{https://CRAN.R-project.org/package=FRK}},
}

@book{R_ggplot2,
  title={ggplot2: Elegant Graphics for Data Analysis},
  author={Wickham, Hadley},
  year={2016},
  publisher={Springer},
  address={New York},
  edition={2}
}

 @Article{R_ggmap,
	author = {David Kahle and Hadley Wickham},
	title = {ggmap: Spatial Visualization with ggplot2},
	journal = {R Journal},
	year = {2013},
	volume = {5},
	number = {1},
	pages = {144--161},
	url = {http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf},
}

@Manual{R_ggquiver,
	title = {ggquiver: Quiver Plots for 'ggplot2'},
	author = {Mitchell O'Hara-Wild},
	year = {2017},
	note = {\texttt{R} package version 0.1.0. Available from \url{https://CRAN.R-project.org/package=ggquiver}},
}

 @Manual{R_gridExtra,
	title = {gridExtra: Miscellaneous Functions for ``Grid'' Graphics},
	author = {Baptiste Auguie},
	year = {2016},
	note = {\texttt{R} package version 2.3. Available from \url{https://CRAN.R-project.org/package=gridExtra}},
}

@Article{R_gstat,
	title = {Spatio-temporal interpolation using gstat},
	author = {Benedikt Gr{\"a}ler and Edzer Pebesma and Gerard Heuvelink},
	year = {2016},
	journal = {R Journal},
	volume = {8},
	issue = {1},
	pages = {204-218},
	url = {https://journal.r-project.org/archive/2016-1/na-pebesma-heuvelink.pdf},
}

 @Manual{R_IDE,
	title = {IDE: Integro-Difference Equation Spatio-Temporal Models},
	author = {Andrew Zammit-Mangion},
	note = {\texttt{R} package version 0.2.0. Available from \url{https://CRAN.R-project.org/package=IDE}},
	year = 2018
}

@Article{R_INLA,
	title = {Bayesian spatial modelling with \texttt{R}-{INLA}},
	author = {Finn Lindgren and H{\aa}vard Rue},
	journal = {Journal of Statistical Software},
	year = {2015},
	volume = {63},
	number = {19},
	pages = {1--25},
	url = {http://www.jstatsoft.org/v63/i19/},
}

@book{R_knitr,
  title={Dynamic Documents with R and knitr},
  author={Xie, Yihui},
  year={2015},
  publisher={Chapman \& Hall/CRC},
  address = {Boca Raton, FL},
  edition = {second}
}

@Book{R_lattice,
	title = {Lattice: Multivariate Data Visualization with R},
	author = {Deepayan Sarkar},
	publisher = {Springer},
	address = {New York},
	year = {2008},
	url = {http://lmdvr.r-forge.r-project.org}
}

@Manual{R_leaps,
	title = {leaps: Regression Subset Selection},
	author = {Thomas Lumley},
	year = {2017},
	note = {\texttt{R} package version 3.0, based on Fortran code by A. Miller. Available from \url{https://CRAN.R-project.org/package=leaps}},
}

 @Article{R_lmtest,
	title = {Diagnostic checking in regression relationships},
	author = {Achim Zeileis and Torsten Hothorn},
	journal = {R News},
	year = {2002},
	volume = {2},
	number = {3},
	pages = {7--10},
	url = {https://CRAN.R-project.org/doc/Rnews/},
}

@Manual{R_maps,
    title = {maps: Draw Geographical Maps},
    author = {Becker, R.~A. and Wilks, A.~R.},
    year = {2017},
    note = {\texttt{R} package version 3.3.0. (R version by Brownrigg, R. Enhancements by Minka, T. P. and Deckmyn, A.) Available from \url{https://CRAN.R-project.org/package=maps}},
  }

@Manual{R_maptools,
	title = {maptools: Tools for Reading and Hand\-ling Spatial Objects},
	author = {Roger Bivand and Nicholas Lewin-Koh},
	year = {2017},
	note = {\texttt{R} package version 0.9-3. Available from \url{https://CRAN.R-project.org/package=maptools}},
}

@Manual{R_Matrix,
	title = {Matrix: Sparse and Dense Matrix Classes and Methods},
	author = {Douglas Bates and Martin Maechler},
	year = {2017},
	note = {\texttt{R} package version 1.2-14. Available from \url{https://CRAN.R-project.org/package=Matrix}},
}

 @Book{R_mgcv,
	title = {Generalized Additive Models: An Introduction with R},
	year = {2017},
	author = {S. N. Wood},
	edition = {2},
	publisher = {Chapman \& Hall/CRC},
	address = {Boca Raton, FL}
}

@Manual{R_nlme,
	title = {{nlme}: Linear and Nonlinear Mixed Effects Models},
	author = {Jose Pinheiro and Douglas Bates and Saikat DebRoy and Deepayan Sarkar and {R Core Team}},
	year = {2017},
	note = {\texttt{R} package version 3.1-131. Available from \url{https://CRAN.R-project.org/package=nlme}},
}

@Manual{R_plotly,
	title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
	author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
	year = {2017},
	note = {\texttt{R} package version 4.7.1. Available from \url{https://CRAN.R-project.org/package=plotly}},
}

 @Article{R_plyr,
	title = {The split-apply-combine strategy for data analysis},
	author = {Hadley Wickham},
	journal = {Journal of Stat\-ist\-ical Software},
	year = {2011},
	volume = {40},
	number = {1},
	pages = {1--29},
	url = {http://www.jstatsoft.org/v40/i01/},
}

@Manual{R_purrr,
	title = {purrr: Functional Programming Tools},
	author = {Lionel Henry and Hadley Wickham},
	year = {2017},
	note = {\texttt{R} package version 0.2.5. Available from \url{https://CRAN.R-project.org/package=purrr}},
}

@Manual{R_RColorBrewer,
	title = {RColorBrewer: ColorBrewer Palettes},
	author = {Erich Neuwirth},
	year = {2014},
	note = {\texttt{R} package version 1.1-2. Available from \url{https://CRAN.R-project.org/package=RColorBrewer}},
}

@Manual{R_scoringRules,
	title = {scoringRules: Scoring Rules for Parametric and Simulated Distribution
	Forecasts},
	author = {Alexander Jordan and Fabian Krueger and Sebastian Lerch},
	year = {2017},
	note = {\texttt{R} package version 0.9.5. Available from \url{https://CRAN.R-project.org/package=scoringRules}},
}

@Book{R_sppackage,
	author = {Roger S. Bivand and Edzer Pebesma and Virgilio Gomez-Rubio},
	title = {Applied Spatial Data Analysis with \texttt{R}},
	edition = {second},
	year = {2013},
	publisher = {Springer},
	address = {New York},
	url = {http://www.asdar-book.org/},
}

@Article{R_spacetime,
	title = {{spacetime}: Spatio-temporal data in \texttt{R}},
	author = {Edzer Pebesma},
	journal = {Journal of Statistical Software},
	year = {2012},
	volume = {51},
	number = {7},
	pages = {1--30},
	url = {http://www.jstatsoft.org/v51/i07/},
}

@Manual{R_SpatialVx,
	title = {SpatialVx: Spatial Forecast Verification},
	author = {Eric Gilleland},
	year = {2018},
	note = {\texttt{R} package version 0.6-3. Available from \url{https://CRAN.R-project.org/package=SpatialVx}},
}



@Manual{R_SpatioTemporal,
	title = {SpatioTemporal: Spatio-Temporal Model Estimation},
	author = {Johan Lindstrom and Adam Szpiro and Paul D. Sampson and Silas Bergen and Assaf P. Oron},
	year = {2013},
	note = {\texttt{R} package version 1.1.7. Available from \url{https://CRAN.R-project.org/package=SpatioTemporal}},
}

@Manual{R_SpecsVerification,
    title = {SpecsVerification: Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate},
    author = {Stefan Siegert},
    year = {2017},
    note = {\texttt{R} package version 0.5-2. Available from \url{https://CRAN.R-project.org/package=SpecsVerification}},
  }


@Manual{R_stargazer,
	title = {stargazer: Well-Formatted Regression and Summary Statistics Tables},
	author = {Marek Hlavac},
	year = {2015},
	note = {\texttt{R} package version 5.2.2. Available from \url{http://CRAN.R-project.org/package=stargazer}},
	organization = {Harvard University},
	address = {Cambridge, MA},
}

@Manual{R_STRbook,
	title = {STRbook: Supplementary Package for Book on ST Modelling with R},
	author = {Andrew Zammit-Mangion},
	note = {\texttt{R} package version 0.1.0. Available from \url{https://github.com/andrewzm/STRbook}},
	year = 2018
}

 @Manual{R_tidyr,
	title = {tidyr: Easily Tidy Data with ``spread()'' and ``gather()'' Functions},
	author = {Hadley Wickham and Lionel Henry},
	year = {2017},
	note = {\texttt{R} package version 0.8.1. Available from \url{https://CRAN.R-project.org/package=tidyr}},
}

@Manual{R_verification,
	title = {verification: Weather Forecast Verification Utilities},
	author = {{NCAR -- Research Applications Laboratory}},
	year = {2015},
	note = {\texttt{R} package version 1.42. Available from \url{https://CRAN.R-project.org/package=verification}},
}

 @Manual{R_xtable,
	title = {xtable: Export Tables to LaTeX or HTML},
	author = {David B. Dahl},
	year = {2016},
	note = {\texttt\texttt{R} package version 1.8-2. Available from \url{https://CRAN.R-project.org/package=xtable}},
}