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PCA Memory Efficiency #1

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joshuahwu opened this issue Jul 26, 2023 · 0 comments
Open
1 of 5 tasks

PCA Memory Efficiency #1

joshuahwu opened this issue Jul 26, 2023 · 0 comments

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@joshuahwu
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joshuahwu commented Jul 26, 2023

PCA implemented in features.pca() is current a memory-limiting step in the analysis pipeline. We use the fast randomized implementation in the fbpca package.

Here are some things we should implement.

  • Downsample frames in dataset. Calculate PC loadings on that set. Project rest of data using PC loadings.
  • Save PC loadings to file.
  • Batch updating of PC loadings w/incremental PCA
  • Create tests using diffsnorm to measure difference in PC scores using these approximations
  • Visualize eigenpostures
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