Skip to content

Commit a209a41

Browse files
committed
Force installation of xcms from github
1 parent 1f12911 commit a209a41

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

Dockerfile

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -11,6 +11,6 @@ WORKDIR /home/rstudio
1111
COPY --chown=rstudio:rstudio . /home/rstudio/
1212

1313
## Install the xcmsTutorials package and additional required packages
14-
RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE); BiocManager::install('xcms', ask = FALSE, type = 'source')"
14+
RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE, type = 'source'); BiocManager::install(c('RCurl', 'xcms'), ask = FALSE, dependencies = TRUE, type = 'source'); BiocManager::install('sneumann/xcms')"
1515

1616
RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = TRUE, repos = BiocManager::repositories())"

0 commit comments

Comments
 (0)