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circos.genomicLabels doesn't work for customized reference #380

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PanZiwei opened this issue Nov 20, 2023 · 0 comments
Open

circos.genomicLabels doesn't work for customized reference #380

PanZiwei opened this issue Nov 20, 2023 · 0 comments

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@PanZiwei
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Hi Zuguang,
Thanks for the amazing tool. I am trying to use circos.genomicLabels to plot specific genes outside of a customized reference, but it doesn't function properly and plot labels inside the circle even though I set up side = "outside"

Would really appreciate it if you could provide any help. Thanks!

test <- data.frame(chr = 'custome', start = 0, end = 90000)
circos.clear()
circos.par("start.degree" = 90)
circos.genomicInitialize(test, sector.names = NA)
bed<-data.frame(c("custome", "custome"), 
                c(100, 500), 
                c(1000, 2000), 
                c("TEST1",'TEST2'))
circos.genomicLabels(bed, labels.column = 4, side = "outside")

test

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