config_test.cfg

# WARNING!!!! DO NOT MODIFY THIS FILE
# IF YOU NEED TO PROVIDE YOUR OWN CONFIGURATION, COPY THIS FILE TO A NEW
# LOCATION AND EDIT THE COPY

# -----------------------------------------------------------------------------
# Copyright (c) 2014--, The Qiita Development Team.
#
# Distributed under the terms of the BSD 3-clause License.
#
# The full license is in the file LICENSE, distributed with this software.
# -----------------------------------------------------------------------------

# ------------------------------ Main settings --------------------------------
[main]
# Change to FALSE in a production system
TEST_ENVIRONMENT = TRUE

# Absolute path to the directory where log files are saved. If not given, no
# log file will be created
LOG_DIR =

# Whether studies require admin approval to be made available
REQUIRE_APPROVAL = True

# Base URL: DO NOT ADD TRAILING SLASH
BASE_URL = https://localhost:8383

# Download path files
UPLOAD_DATA_DIR = /home/runner/work/qiita/qiita/qiita_db/support_files/test_data/uploads/

# Working directory path
WORKING_DIR = /home/runner/work/qiita/qiita/qiita_db/support_files/test_data/working_dir/

# Maximum upload size (in Gb)
MAX_UPLOAD_SIZE = 100

# Path to the base directory where the data files are going to be stored
BASE_DATA_DIR = /home/runner/work/qiita/qiita/qiita_db/support_files/test_data/

# Valid upload extension, comma separated. Empty for no uploads
VALID_UPLOAD_EXTENSION = fastq,fastq.gz,txt,tsv,sff,fna,qual

# The script used to start the qiita environment, if any
# used to spawn private CLI to a cluster
QIITA_ENV = source activate qiita

# Script used for launching private Qiita tasks
PRIVATE_LAUNCHER = qiita-private-launcher

# Script used for launching plugins
PLUGIN_LAUNCHER = qiita-plugin-launcher

# Plugins configuration directory
PLUGIN_DIR =

# Webserver certificate file paths
CERTIFICATE_FILE =
KEY_FILE =

# The value used to secure cookies used for user sessions. A suitable value can
# be generated with:
#
# python -c "from base64 import b64encode;\
#   from uuid import uuid4;\
#   print b64encode(uuid4().bytes + uuid4().bytes)"
COOKIE_SECRET = SECRET

# The value used to secure JWTs for delegated permission artifact download.
JWT_SECRET = SUPER_SECRET

# Address a user should write to when asking for help
HELP_EMAIL = foo@bar.com

# The email address, Qiita sends internal notifications to a sys admin
SYSADMIN_EMAIL = jeff@bar.com

# ----------------------------- SMTP settings -----------------------------
[smtp]
# The hostname to connect to
# Google: smtp.google.com
HOST = localhost

# The port to connect to the database
# Google: 587
PORT = 25

# SSL needed (True or False)
# Google: True
SSL = False

# The user name to connect with
USER =

# The user password to connect with
PASSWORD =

# The email to have messages sent from
EMAIL = example@domain.com

# ----------------------------- Redis settings --------------------------------
[redis]
HOST = localhost
PORT = 7777
PASSWORD =
# The redis database you will use, redis has a max of 16.
# Qiita should have its own database
DB = 13

# ----------------------------- Postgres settings -----------------------------
[postgres]
# The user name to connect to the database
USER = postgres

# The administrator user, which can be used to create/drop environments
ADMIN_USER = postgres

# The database to connect to
DATABASE = qiita_test

# The host where the database lives on
HOST = localhost

# The port to connect to the database
PORT = 5432

# The password to use to connect to the database
PASSWORD = postgres

# The postgres password for the admin_user
ADMIN_PASSWORD = postgres

# ----------------------------- Job Scheduler Settings -----------------------------
[job_scheduler]
# The email address of the submitter of jobs
JOB_SCHEDULER_JOB_OWNER = user@somewhere.org

# The number of seconds to wait between successive calls
JOB_SCHEDULER__POLLING_VALUE = 15

# Hard upper-limit on concurrently running validator jobs
JOB_SCHEDULER_PROCESSING_QUEUE_COUNT = 2

# ----------------------------- EBI settings -----------------------------
[ebi]
# The user to use when submitting to EBI
EBI_SEQ_XFER_USER = Webin-41528

# Password for the above user
EBI_SEQ_XFER_PASS =

# URL of EBI's FASP site
EBI_SEQ_XFER_URL = webin.ebi.ac.uk

# URL of EBI's HTTPS dropbox
# live submission URL
#EBI_DROPBOX_URL = https://www.ebi.ac.uk/ena/submit/drop-box/submit/
# testing URL
EBI_DROPBOX_URL = https://www-test.ebi.ac.uk/ena/submit/drop-box/submit/

# The name of the sequencing center to use when doing EBI submissions
EBI_CENTER_NAME = qiita-test

# This string (with an underscore) will be prefixed to your EBI submission and
# study aliases
EBI_ORGANIZATION_PREFIX = example_organization

# ----------------------------- VAMPS settings -----------------------------
[vamps]
# general info to submit to vamps
USER = user
PASSWORD = password
URL = https://vamps.mbl.edu/mobe_workshop/getfile.php

# ----------------------------- Portal settings -----------------------------
[portal]

# Portal the site is working under
PORTAL = QIITA

# Portal subdirectory
PORTAL_DIR =

# Full path to portal styling config file
PORTAL_FP =

# The center latitude of the world map, shown on the Stats map.
# Defaults to 40.01027 (Boulder, CO, USA)
STATS_MAP_CENTER_LATITUDE =

# The center longitude of the world map, shown on the Stats map.
# Defaults to -105.24827 (Boulder, CO, USA)
STATS_MAP_CENTER_LONGITUDE =

# ----------------------------- iframes settings ---------------------------
[iframe]
# On May 2024, we removed QIIMP from the code base but we will leave this
# section in case we need to add access to another iframe in the future; note
# that the qiita-terms are also accessed via iframe but this is internal

# ----------------------------- User tracking Settings ---------------------
[user_tracking]
# You might want to track user on your Qiita instance. You can here inject
# JavaScript code to the sitebase.html template, which means it will be added
# to basically every page of Qiita.
JS_CODE =