From 2d1ab235015065408bb7399a83a73592ad94c1c2 Mon Sep 17 00:00:00 2001 From: Janosh Riebesell Date: Sat, 18 Jan 2025 18:18:53 -0500 Subject: [PATCH] add jensens-inequality.typ converted from jensens-inequality.tex change readme title from gear icon with TikZ text to "Scientific Diagrams" update-readme-table.py now errors on typst/latex code files without a corresponding YAML metadata file rename shell.tex to momentum-shell.tex and add momentum-shell.typ typst translation rename hea.tex to high-entropy-alloy.tex --- assets/aviary/aviary.yml | 1 + assets/dft-choices/dft-choices.typ | 113 ++++++++++ assets/dft-choices/dft-choices.yml | 11 +- .../high-entropy-alloy-hd.png} | Bin .../high-entropy-alloy.pdf} | Bin .../high-entropy-alloy.png} | Bin .../high-entropy-alloy.tex} | 0 .../high-entropy-alloy.yml} | 0 .../jensens-inequality/jensens-inequality.typ | 42 ++++ .../momentum-shell-hd.png} | Bin .../momentum-shell.pdf} | Bin .../momentum-shell.png} | Bin .../momentum-shell.svg} | 0 .../momentum-shell.tex} | 0 assets/momentum-shell/momentum-shell.typ | 36 +++ .../momentum-shell.yml} | 0 assets/mphil-gantt/mphil-gantt.yml | 1 + readme.md | 208 +++++++++--------- scripts/render-tikz.py | 4 +- scripts/update-readme-table.py | 42 +++- 20 files changed, 336 insertions(+), 122 deletions(-) create mode 100644 assets/dft-choices/dft-choices.typ rename assets/{hea/hea-hd.png => high-entropy-alloy/high-entropy-alloy-hd.png} (100%) rename assets/{hea/hea.pdf => high-entropy-alloy/high-entropy-alloy.pdf} (100%) rename assets/{hea/hea.png => high-entropy-alloy/high-entropy-alloy.png} (100%) rename assets/{hea/hea.tex => high-entropy-alloy/high-entropy-alloy.tex} (100%) rename assets/{hea/hea.yml => high-entropy-alloy/high-entropy-alloy.yml} (100%) create mode 100644 assets/jensens-inequality/jensens-inequality.typ rename assets/{shell/shell-hd.png => momentum-shell/momentum-shell-hd.png} (100%) rename assets/{shell/shell.pdf => momentum-shell/momentum-shell.pdf} (100%) rename assets/{shell/shell.png => momentum-shell/momentum-shell.png} (100%) rename assets/{shell/shell.svg => momentum-shell/momentum-shell.svg} (100%) rename assets/{shell/shell.tex => momentum-shell/momentum-shell.tex} (100%) create mode 100644 assets/momentum-shell/momentum-shell.typ rename assets/{shell/shell.yml => momentum-shell/momentum-shell.yml} (100%) diff --git a/assets/aviary/aviary.yml b/assets/aviary/aviary.yml index ec44ec1..e67b828 100644 --- a/assets/aviary/aviary.yml +++ b/assets/aviary/aviary.yml @@ -5,3 +5,4 @@ tags: - materials informatics description: | Aviary logo: a repo of machine learning models for representation learning in materials discovery from stoichiometry and symmetries via graph convolutions. For . +hide: true diff --git a/assets/dft-choices/dft-choices.typ b/assets/dft-choices/dft-choices.typ new file mode 100644 index 0000000..8b6c5c2 --- /dev/null +++ b/assets/dft-choices/dft-choices.typ @@ -0,0 +1,113 @@ +#import "@preview/cetz:0.3.1": canvas, draw + +#set page(width: auto, height: auto, margin: 8pt) + +#canvas({ + import draw: * + + let orange-fill = rgb(100%, 80%, 70%) + let red-fill = rgb(100%, 80%, 80%) + let gray-fill = rgb(90%, 90%, 90%) + let blue-fill = rgb(80%, 80%, 100%) + + // Helper function for rounded rectangles with text + let node(pos, text, fill: none, name: none) = { + rect( + (pos.at(0) - 2cm, pos.at(1) - 1.5cm), + (pos.at(0) + 2cm, pos.at(1) + 1.5cm), + fill: fill, + stroke: black + 1pt, + radius: 3mm, + name: name, + ) + content( + pos, + text, + anchor: "center", + ) + } + + // Helper for comment nodes + let comment(pos, text, name: none) = { + content( + pos, + text, + anchor: "center", + name: name, + ) + } + + // Main equation components + content((0cm, 0cm), $($, anchor: "center", scale: 300%) + node((4cm, 0cm), $-frac(h^2, 2m) nabla^2_bold(r)$, fill: orange-fill, name: "kinetic") + content((6.5cm, 0cm), $+$, anchor: "center", scale: 200%) + node((9cm, 0cm), $v_"ext"(bold(r))$, fill: red-fill, name: "external") + content((11.5cm, 0cm), $+$, anchor: "center", scale: 200%) + node((14cm, 0cm), $v_H(bold(r))$, fill: red-fill, name: "hartree") + content((16.5cm, 0cm), $+$, anchor: "center", scale: 200%) + node((19cm, 0cm), $v_"xc"$, fill: red-fill, name: "xc") + content((21cm, 0cm), $)$, anchor: "center", scale: 300%) + node((24cm, 0cm), $phi_i(bold(r))$, fill: gray-fill, name: "phi1") + content((26.5cm, 0cm), $=$, anchor: "center", scale: 200%) + node((29cm, 0cm), $E_i$, fill: blue-fill, name: "energy") + node((32cm, 0cm), $phi_i(bold(r))$, fill: gray-fill, name: "phi2") + + // Comments with line breaks + comment( + (4cm, 4cm), + [#set align(center) + #text(14pt)[non-rel. Schrödinger equation\ + or relativistic Dirac equation]], + name: "kinetic-comment", + ) + comment( + (9cm, -4cm), + [#set align(center) + #text(14pt)[pseudopotential\ + (ultrasoft/PAW/norm-conserving)\ + or all-electron]], + name: "external-comment", + ) + comment( + (14cm, -4cm), + [#set align(center) + #text(14pt)[Hartree potential\ + from solving Poisson eq.\ + or integrating charge density]], + name: "hartree-comment", + ) + comment( + (19cm, 4cm), + [#set align(center) + #text(14pt)[LDA or GGA\ + or hybrids]], + name: "xc-comment", + ) + comment( + (28cm, 4cm), + [#set align(center) + #text(14pt)[physical orbitals or not\ + mesh density and basis set]], + name: "phi-comment", + ) + comment( + (29cm, -4cm), + [#set align(center) + #text(14pt)[view EVs as mere Lagrange\ + multipliers or band structure approx]], + name: "energy-comment", + ) + + // Arrows + let arrow-style = ( + mark: (end: "stealth"), + stroke: 1pt, + ) + line("kinetic-comment", "kinetic.north", ..arrow-style) + line("external-comment", "external.south", ..arrow-style) + line("hartree-comment", "hartree.south", ..arrow-style) + line("xc-comment", "xc.north", ..arrow-style) + line("phi-comment", "phi1.north", ..arrow-style) + line("phi-comment", "phi2.north", ..arrow-style) + line("energy-comment", "energy.south", ..arrow-style) +}) diff --git a/assets/dft-choices/dft-choices.yml b/assets/dft-choices/dft-choices.yml index a8a63f6..96dcc0f 100644 --- a/assets/dft-choices/dft-choices.yml +++ b/assets/dft-choices/dft-choices.yml @@ -1,7 +1,8 @@ -title: Kohn-Sham DFT User Choices +title: DFT Choices +description: A diagram illustrating the various choices and components in density functional theory (DFT) calculations, including kinetic energy, external potential, Hartree potential, and exchange-correlation terms. tags: - physics - - quantum-mechanics - - density-functional-theory - - Kohn-Sham -description: Visualization of the many choices involved in a Kohn-Sham calculation. It can be non-relativistic based on the classical Schrödinger equation or fully relativistic based on the Dirac equation which includes spin-orbit coupling. The near-core electrons can be modeled explicitly in an all-electron calculation or, much more commonly, incorporated along with the nucleus into an effective pseudo-potential. The Hartree energy can be obtained by integrating the charge density or by solving the Poisson equation. The exchange-correlation potential can be treated with a huge library of density functionals, most commonly LDA and GGA. The wave functions can be computed on a numerical mesh and expanded in one of many possible basis sets, e.g. plane waves, APW, or PAW. Inspired by fig. 3 in [arxiv:cond-mat/0211443](https://arxiv.org/abs/cond-mat/0211443). + - quantum mechanics + - dft + - equations + - schematic diff --git a/assets/hea/hea-hd.png b/assets/high-entropy-alloy/high-entropy-alloy-hd.png similarity index 100% rename from assets/hea/hea-hd.png rename to assets/high-entropy-alloy/high-entropy-alloy-hd.png diff --git a/assets/hea/hea.pdf b/assets/high-entropy-alloy/high-entropy-alloy.pdf similarity index 100% rename from assets/hea/hea.pdf rename to assets/high-entropy-alloy/high-entropy-alloy.pdf diff --git a/assets/hea/hea.png b/assets/high-entropy-alloy/high-entropy-alloy.png similarity index 100% rename from assets/hea/hea.png rename to assets/high-entropy-alloy/high-entropy-alloy.png diff --git a/assets/hea/hea.tex b/assets/high-entropy-alloy/high-entropy-alloy.tex similarity index 100% rename from assets/hea/hea.tex rename to assets/high-entropy-alloy/high-entropy-alloy.tex diff --git a/assets/hea/hea.yml b/assets/high-entropy-alloy/high-entropy-alloy.yml similarity index 100% rename from assets/hea/hea.yml rename to assets/high-entropy-alloy/high-entropy-alloy.yml diff --git a/assets/jensens-inequality/jensens-inequality.typ b/assets/jensens-inequality/jensens-inequality.typ new file mode 100644 index 0000000..7382459 --- /dev/null +++ b/assets/jensens-inequality/jensens-inequality.typ @@ -0,0 +1,42 @@ +#import "@preview/cetz:0.3.1": canvas, draw +#import "@preview/cetz-plot:0.1.0": plot + +#set page(width: auto, height: auto, margin: 8pt) + +#canvas({ + let mark = (end: "stealth", fill: black, scale: 0.7) + draw.set-style( + axes: ( + y: (label: (anchor: "north-west", offset: -0.2), mark: mark), + x: (label: (anchor: "south-east", offset: -0.25), mark: mark), + ), + ) + + plot.plot( + size: (8, 6), + x-label: $x$, + y-label: $log x$, + y-min: -1, + x-tick-step: none, + y-tick-step: none, + axis-style: "school-book", + { + // Main logarithmic curve + plot.add( + style: (stroke: rgb(0%, 0%, 80%) + 1.5pt), + domain: (11, 150), + samples: 150, + x => calc.ln(x - 10) - 2, + ) + + // Dashed line + plot.add( + style: ( + stroke: (paint: orange, thickness: 1.5pt, dash: "dashed"), + ), + domain: (8, 120), + x => 0.2 + (3 - 0.2) * (x - 8) / (120 - 8), + ) + }, + ) +}) diff --git a/assets/shell/shell-hd.png b/assets/momentum-shell/momentum-shell-hd.png similarity index 100% rename from assets/shell/shell-hd.png rename to assets/momentum-shell/momentum-shell-hd.png diff --git a/assets/shell/shell.pdf b/assets/momentum-shell/momentum-shell.pdf similarity index 100% rename from assets/shell/shell.pdf rename to assets/momentum-shell/momentum-shell.pdf diff --git a/assets/shell/shell.png b/assets/momentum-shell/momentum-shell.png similarity index 100% rename from assets/shell/shell.png rename to assets/momentum-shell/momentum-shell.png diff --git a/assets/shell/shell.svg b/assets/momentum-shell/momentum-shell.svg similarity index 100% rename from assets/shell/shell.svg rename to assets/momentum-shell/momentum-shell.svg diff --git a/assets/shell/shell.tex b/assets/momentum-shell/momentum-shell.tex similarity index 100% rename from assets/shell/shell.tex rename to assets/momentum-shell/momentum-shell.tex diff --git a/assets/momentum-shell/momentum-shell.typ b/assets/momentum-shell/momentum-shell.typ new file mode 100644 index 0000000..b9d0c8c --- /dev/null +++ b/assets/momentum-shell/momentum-shell.typ @@ -0,0 +1,36 @@ +#import "@preview/cetz:0.3.1": canvas, draw + +#set page(width: auto, height: auto, margin: 3pt) + +#canvas({ + import draw: line, content, circle + + let rx = 4 + let ry = 2.2 + let arrow-style = (mark: (end: "stealth", fill: black), stroke: 1pt) + + // Axes + line((-rx - 0.5, 0), (rx + 0.5, 0), ..arrow-style) + content((rx + 0.5, 0), $q_1$, anchor: "west", padding: 2pt) + + line((0, -ry - 0.5), (0, ry + 0.5), ..arrow-style) + content((0, ry + 0.5), $q_2$, anchor: "south", padding: 2pt) + + // Ellipse + circle( + (0, 0), + radius: (rx, ry), + stroke: blue, + fill: rgb(0%, 0%, 100%, 5%), + name: "ellipse", + ) + + // Labels for radii + content((rx + .2, 1), $sqrt(2E \/ m)$, anchor: "south-west", padding: 1pt, name: "r1") + line((rx, 0), "r1.south", stroke: 0.2pt) + content((0.5, ry + .5), $sqrt(2E \/ k)$, anchor: "south-west", padding: 1pt, name: "r2") + line((0, ry), "r2.south-west", stroke: 0.2pt) + + // Label P + content((3, 1), text(fill: blue)[$P$]) +}) diff --git a/assets/shell/shell.yml b/assets/momentum-shell/momentum-shell.yml similarity index 100% rename from assets/shell/shell.yml rename to assets/momentum-shell/momentum-shell.yml diff --git a/assets/mphil-gantt/mphil-gantt.yml b/assets/mphil-gantt/mphil-gantt.yml index 88d8524..46e54c5 100644 --- a/assets/mphil-gantt/mphil-gantt.yml +++ b/assets/mphil-gantt/mphil-gantt.yml @@ -3,3 +3,4 @@ tags: - info-graphics description: | Useless Gantt chart for my Scientific Computing MPhil project at Cambridge University titled "Data-Driven Risk-Conscious Thermoelectric Materials Discovery". See . +hide: true diff --git a/readme.md b/readme.md index ed12ea0..245b967 100644 --- a/readme.md +++ b/readme.md @@ -1,7 +1,5 @@

- - TikZ - + Scientific Diagrams

@@ -14,9 +12,9 @@

-Collection of **116** diagrams for illustrating concepts in physics, chemistry and machine learning. +Collection of **113** diagrams illustrating concepts in physics, chemistry and machine learning. -Check out [janosh.github.io](https://janosh.github.io/diagrams) to search, sort, open in Overleaf and download figures (PDF/SVG/PNG) from this collection. +Check out [janosh.github.io/diagrams](https://janosh.github.io/diagrams) to search, sort, open in Overleaf and download figures (PDF/SVG/PNG) from this collection. Have a TikZ image you'd like to share? [Submit a PR](https://github.com/janosh/diagrams/pulls) with a `.tex` and metadata `.yml` file in the `assets/` directory and add yourself to the [`citation.cff`](citation.cff) file. @@ -24,86 +22,84 @@ Have a TikZ image you'd like to share? [Submit a PR](https://github.com/janosh/d |                        |                        | | :----------------------------------------------------------------------------------------------------------------------------------: | :----------------------------------------------------------------------------------------------------------------------------------: | -| [`autoencoder`](https://janosh.github.io/diagrams/autoencoder) | [`aviary`](https://janosh.github.io/diagrams/aviary) | -| ![`autoencoder.png`](assets/autoencoder/autoencoder.png) | ![`aviary.png`](assets/aviary/aviary.png) | -| [`basis-plus-lattice`](https://janosh.github.io/diagrams/basis-plus-lattice) | [`bloch-sphere`](https://janosh.github.io/diagrams/bloch-sphere) | -| ![`basis-plus-lattice.png`](assets/basis-plus-lattice/basis-plus-lattice.png) | ![`bloch-sphere.png`](assets/bloch-sphere/bloch-sphere.png) | -| [`bose-einstein-distribution-3d`](https://janosh.github.io/diagrams/bose-einstein-distribution-3d) | [`bose-einstein-distribution`](https://janosh.github.io/diagrams/bose-einstein-distribution) | -| ![`bose-einstein-distribution-3d.png`](assets/bose-einstein-distribution-3d/bose-einstein-distribution-3d.png) | ![`bose-einstein-distribution.png`](assets/bose-einstein-distribution/bose-einstein-distribution.png) | -| [`branch-and-bound`](https://janosh.github.io/diagrams/branch-and-bound) | [`branch-cuts-1`](https://janosh.github.io/diagrams/branch-cuts-1) | -| ![`branch-and-bound.png`](assets/branch-and-bound/branch-and-bound.png) | ![`branch-cuts-1.png`](assets/branch-cuts-1/branch-cuts-1.png) | -| [`branch-cuts-2`](https://janosh.github.io/diagrams/branch-cuts-2) | [`change-of-variables`](https://janosh.github.io/diagrams/change-of-variables) | -| ![`branch-cuts-2.png`](assets/branch-cuts-2/branch-cuts-2.png) | ![`change-of-variables.png`](assets/change-of-variables/change-of-variables.png) | -| [`closed-string-topologies`](https://janosh.github.io/diagrams/closed-string-topologies) | [`complex-sign-function`](https://janosh.github.io/diagrams/complex-sign-function) | -| ![`closed-string-topologies.png`](assets/closed-string-topologies/closed-string-topologies.png) | ![`complex-sign-function.png`](assets/complex-sign-function/complex-sign-function.png) | -| [`concave-functions`](https://janosh.github.io/diagrams/concave-functions) | [`conv2d`](https://janosh.github.io/diagrams/conv2d) | -| ![`concave-functions.png`](assets/concave-functions/concave-functions.png) | ![`conv2d.png`](assets/conv2d/conv2d.png) | -| [`convex-functions`](https://janosh.github.io/diagrams/convex-functions) | [`convex-hull-of-stability`](https://janosh.github.io/diagrams/convex-hull-of-stability) | -| ![`convex-functions.png`](assets/convex-functions/convex-functions.png) | ![`convex-hull-of-stability.png`](assets/convex-hull-of-stability/convex-hull-of-stability.png) | -| [`critical-temperature`](https://janosh.github.io/diagrams/critical-temperature) | [`cylinder-to-plane`](https://janosh.github.io/diagrams/cylinder-to-plane) | -| ![`critical-temperature.png`](assets/critical-temperature/critical-temperature.png) | ![`cylinder-to-plane.png`](assets/cylinder-to-plane/cylinder-to-plane.png) | -| [`detailed-balance`](https://janosh.github.io/diagrams/detailed-balance) | [`dft-choices`](https://janosh.github.io/diagrams/dft-choices) | -| ![`detailed-balance.png`](assets/detailed-balance/detailed-balance.png) | ![`dft-choices.png`](assets/dft-choices/dft-choices.png) | -| [`dft-mlff-cff-speed-accuracy-transfer`](https://janosh.github.io/diagrams/dft-mlff-cff-speed-accuracy-transfer) | [`diagrams`](https://janosh.github.io/diagrams/diagrams) | -| ![`dft-mlff-cff-speed-accuracy-transfer.png`](assets/dft-mlff-cff-speed-accuracy-transfer/dft-mlff-cff-speed-accuracy-transfer.png) | ![`diagrams.png`](assets/diagrams/diagrams.png) | -| [`disk-to-plane`](https://janosh.github.io/diagrams/disk-to-plane) | [`divergence`](https://janosh.github.io/diagrams/divergence) | -| ![`disk-to-plane.png`](assets/disk-to-plane/disk-to-plane.png) | ![`divergence.png`](assets/divergence/divergence.png) | -| [`dropout`](https://janosh.github.io/diagrams/dropout) | [`energy-distribution-functions`](https://janosh.github.io/diagrams/energy-distribution-functions) | -| ![`dropout.png`](assets/dropout/dropout.png) | ![`energy-distribution-functions.png`](assets/energy-distribution-functions/energy-distribution-functions.png) | -| [`ergodic`](https://janosh.github.io/diagrams/ergodic) | [`euler-angles`](https://janosh.github.io/diagrams/euler-angles) | -| ![`ergodic.png`](assets/ergodic/ergodic.png) | ![`euler-angles.png`](assets/euler-angles/euler-angles.png) | -| [`fermi-dirac-vs-temp`](https://janosh.github.io/diagrams/fermi-dirac-vs-temp) | [`ferroelectric-response`](https://janosh.github.io/diagrams/ferroelectric-response) | -| ![`fermi-dirac-vs-temp.png`](assets/fermi-dirac-vs-temp/fermi-dirac-vs-temp.png) | ![`ferroelectric-response.png`](assets/ferroelectric-response/ferroelectric-response.png) | -| [`feynman-1`](https://janosh.github.io/diagrams/feynman-1) | [`feynman-2`](https://janosh.github.io/diagrams/feynman-2) | -| ![`feynman-1.png`](assets/feynman-1/feynman-1.png) | ![`feynman-2.png`](assets/feynman-2/feynman-2.png) | -| [`feynman-3`](https://janosh.github.io/diagrams/feynman-3) | [`feynman-4`](https://janosh.github.io/diagrams/feynman-4) | -| ![`feynman-3.png`](assets/feynman-3/feynman-3.png) | ![`feynman-4.png`](assets/feynman-4/feynman-4.png) | -| [`feynman-diagram-propagator-loop`](https://janosh.github.io/diagrams/feynman-diagram-propagator-loop) | [`fluctuations`](https://janosh.github.io/diagrams/fluctuations) | -| ![`feynman-diagram-propagator-loop.png`](assets/feynman-diagram-propagator-loop/feynman-diagram-propagator-loop.png) | ![`fluctuations.png`](assets/fluctuations/fluctuations.png) | -| [`four-vs-of-data`](https://janosh.github.io/diagrams/four-vs-of-data) | [`gan`](https://janosh.github.io/diagrams/gan) | -| ![`four-vs-of-data.png`](assets/four-vs-of-data/four-vs-of-data.png) | ![`gan.png`](assets/gan/gan.png) | -| [`geometric-bayes`](https://janosh.github.io/diagrams/geometric-bayes) | [`graph-isomorphism`](https://janosh.github.io/diagrams/graph-isomorphism) | -| ![`geometric-bayes.png`](assets/geometric-bayes/geometric-bayes.png) | ![`graph-isomorphism.png`](assets/graph-isomorphism/graph-isomorphism.png) | -| [`gravitons`](https://janosh.github.io/diagrams/gravitons) | [`harm-osc-energy-freq`](https://janosh.github.io/diagrams/harm-osc-energy-freq) | -| ![`gravitons.png`](assets/gravitons/gravitons.png) | ![`harm-osc-energy-freq.png`](assets/harm-osc-energy-freq/harm-osc-energy-freq.png) | -| [`harm-osc-energy-inv-temp`](https://janosh.github.io/diagrams/harm-osc-energy-inv-temp) | [`hea`](https://janosh.github.io/diagrams/hea) | -| ![`harm-osc-energy-inv-temp.png`](assets/harm-osc-energy-inv-temp/harm-osc-energy-inv-temp.png) | ![`hea.png`](assets/hea/hea.png) | +| [`autoencoder`](https://janosh.github.io/diagrams/autoencoder) | [`basis-plus-lattice`](https://janosh.github.io/diagrams/basis-plus-lattice) | +| ![`autoencoder.png`](assets/autoencoder/autoencoder.png) | ![`basis-plus-lattice.png`](assets/basis-plus-lattice/basis-plus-lattice.png) | +| [`bloch-sphere`](https://janosh.github.io/diagrams/bloch-sphere) | [`bose-einstein-distribution-3d`](https://janosh.github.io/diagrams/bose-einstein-distribution-3d) | +| ![`bloch-sphere.png`](assets/bloch-sphere/bloch-sphere.png) | ![`bose-einstein-distribution-3d.png`](assets/bose-einstein-distribution-3d/bose-einstein-distribution-3d.png) | +| [`bose-einstein-distribution`](https://janosh.github.io/diagrams/bose-einstein-distribution) | [`branch-and-bound`](https://janosh.github.io/diagrams/branch-and-bound) | +| ![`bose-einstein-distribution.png`](assets/bose-einstein-distribution/bose-einstein-distribution.png) | ![`branch-and-bound.png`](assets/branch-and-bound/branch-and-bound.png) | +| [`branch-cuts-1`](https://janosh.github.io/diagrams/branch-cuts-1) | [`branch-cuts-2`](https://janosh.github.io/diagrams/branch-cuts-2) | +| ![`branch-cuts-1.png`](assets/branch-cuts-1/branch-cuts-1.png) | ![`branch-cuts-2.png`](assets/branch-cuts-2/branch-cuts-2.png) | +| [`change-of-variables`](https://janosh.github.io/diagrams/change-of-variables) | [`closed-string-topologies`](https://janosh.github.io/diagrams/closed-string-topologies) | +| ![`change-of-variables.png`](assets/change-of-variables/change-of-variables.png) | ![`closed-string-topologies.png`](assets/closed-string-topologies/closed-string-topologies.png) | +| [`complex-sign-function`](https://janosh.github.io/diagrams/complex-sign-function) | [`concave-functions`](https://janosh.github.io/diagrams/concave-functions) | +| ![`complex-sign-function.png`](assets/complex-sign-function/complex-sign-function.png) | ![`concave-functions.png`](assets/concave-functions/concave-functions.png) | +| [`conv2d`](https://janosh.github.io/diagrams/conv2d) | [`convex-functions`](https://janosh.github.io/diagrams/convex-functions) | +| ![`conv2d.png`](assets/conv2d/conv2d.png) | ![`convex-functions.png`](assets/convex-functions/convex-functions.png) | +| [`convex-hull-of-stability`](https://janosh.github.io/diagrams/convex-hull-of-stability) | [`critical-temperature`](https://janosh.github.io/diagrams/critical-temperature) | +| ![`convex-hull-of-stability.png`](assets/convex-hull-of-stability/convex-hull-of-stability.png) | ![`critical-temperature.png`](assets/critical-temperature/critical-temperature.png) | +| [`cylinder-to-plane`](https://janosh.github.io/diagrams/cylinder-to-plane) | [`detailed-balance`](https://janosh.github.io/diagrams/detailed-balance) | +| ![`cylinder-to-plane.png`](assets/cylinder-to-plane/cylinder-to-plane.png) | ![`detailed-balance.png`](assets/detailed-balance/detailed-balance.png) | +| [`dft-choices`](https://janosh.github.io/diagrams/dft-choices) | [`dft-mlff-cff-speed-accuracy-transfer`](https://janosh.github.io/diagrams/dft-mlff-cff-speed-accuracy-transfer) | +| ![`dft-choices.png`](assets/dft-choices/dft-choices.png) | ![`dft-mlff-cff-speed-accuracy-transfer.png`](assets/dft-mlff-cff-speed-accuracy-transfer/dft-mlff-cff-speed-accuracy-transfer.png) | +| [`diagrams`](https://janosh.github.io/diagrams/diagrams) | [`disk-to-plane`](https://janosh.github.io/diagrams/disk-to-plane) | +| ![`diagrams.png`](assets/diagrams/diagrams.png) | ![`disk-to-plane.png`](assets/disk-to-plane/disk-to-plane.png) | +| [`divergence`](https://janosh.github.io/diagrams/divergence) | [`dropout`](https://janosh.github.io/diagrams/dropout) | +| ![`divergence.png`](assets/divergence/divergence.png) | ![`dropout.png`](assets/dropout/dropout.png) | +| [`energy-distribution-functions`](https://janosh.github.io/diagrams/energy-distribution-functions) | [`ergodic`](https://janosh.github.io/diagrams/ergodic) | +| ![`energy-distribution-functions.png`](assets/energy-distribution-functions/energy-distribution-functions.png) | ![`ergodic.png`](assets/ergodic/ergodic.png) | +| [`euler-angles`](https://janosh.github.io/diagrams/euler-angles) | [`fermi-dirac-vs-temp`](https://janosh.github.io/diagrams/fermi-dirac-vs-temp) | +| ![`euler-angles.png`](assets/euler-angles/euler-angles.png) | ![`fermi-dirac-vs-temp.png`](assets/fermi-dirac-vs-temp/fermi-dirac-vs-temp.png) | +| [`ferroelectric-response`](https://janosh.github.io/diagrams/ferroelectric-response) | [`feynman-1`](https://janosh.github.io/diagrams/feynman-1) | +| ![`ferroelectric-response.png`](assets/ferroelectric-response/ferroelectric-response.png) | ![`feynman-1.png`](assets/feynman-1/feynman-1.png) | +| [`feynman-2`](https://janosh.github.io/diagrams/feynman-2) | [`feynman-3`](https://janosh.github.io/diagrams/feynman-3) | +| ![`feynman-2.png`](assets/feynman-2/feynman-2.png) | ![`feynman-3.png`](assets/feynman-3/feynman-3.png) | +| [`feynman-4`](https://janosh.github.io/diagrams/feynman-4) | [`feynman-diagram-propagator-loop`](https://janosh.github.io/diagrams/feynman-diagram-propagator-loop) | +| ![`feynman-4.png`](assets/feynman-4/feynman-4.png) | ![`feynman-diagram-propagator-loop.png`](assets/feynman-diagram-propagator-loop/feynman-diagram-propagator-loop.png) | +| [`fluctuations`](https://janosh.github.io/diagrams/fluctuations) | [`four-vs-of-data`](https://janosh.github.io/diagrams/four-vs-of-data) | +| ![`fluctuations.png`](assets/fluctuations/fluctuations.png) | ![`four-vs-of-data.png`](assets/four-vs-of-data/four-vs-of-data.png) | +| [`gan`](https://janosh.github.io/diagrams/gan) | [`geometric-bayes`](https://janosh.github.io/diagrams/geometric-bayes) | +| ![`gan.png`](assets/gan/gan.png) | ![`geometric-bayes.png`](assets/geometric-bayes/geometric-bayes.png) | +| [`graph-isomorphism`](https://janosh.github.io/diagrams/graph-isomorphism) | [`gravitons`](https://janosh.github.io/diagrams/gravitons) | +| ![`graph-isomorphism.png`](assets/graph-isomorphism/graph-isomorphism.png) | ![`gravitons.png`](assets/gravitons/gravitons.png) | +| [`harm-osc-energy-freq`](https://janosh.github.io/diagrams/harm-osc-energy-freq) | [`harm-osc-energy-inv-temp`](https://janosh.github.io/diagrams/harm-osc-energy-inv-temp) | +| ![`harm-osc-energy-freq.png`](assets/harm-osc-energy-freq/harm-osc-energy-freq.png) | ![`harm-osc-energy-inv-temp.png`](assets/harm-osc-energy-inv-temp/harm-osc-energy-inv-temp.png) | | [`heatmap`](https://janosh.github.io/diagrams/heatmap) | [`higgs-potential`](https://janosh.github.io/diagrams/higgs-potential) | | ![`heatmap.png`](assets/heatmap/heatmap.png) | ![`higgs-potential.png`](assets/higgs-potential/higgs-potential.png) | -| [`isotherms`](https://janosh.github.io/diagrams/isotherms) | [`jensens-inequality`](https://janosh.github.io/diagrams/jensens-inequality) | -| ![`isotherms.png`](assets/isotherms/isotherms.png) | ![`jensens-inequality.png`](assets/jensens-inequality/jensens-inequality.png) | -| [`k-space`](https://janosh.github.io/diagrams/k-space) | [`kohn-sham-cycle`](https://janosh.github.io/diagrams/kohn-sham-cycle) | -| ![`k-space.png`](assets/k-space/k-space.png) | ![`kohn-sham-cycle.png`](assets/kohn-sham-cycle/kohn-sham-cycle.png) | -| [`light`](https://janosh.github.io/diagrams/light) | [`loop`](https://janosh.github.io/diagrams/loop) | -| ![`light.png`](assets/light/light.png) | ![`loop.png`](assets/loop/loop.png) | -| [`loops`](https://janosh.github.io/diagrams/loops) | [`m-theory`](https://janosh.github.io/diagrams/m-theory) | -| ![`loops.png`](assets/loops/loops.png) | ![`m-theory.png`](assets/m-theory/m-theory.png) | -| [`made`](https://janosh.github.io/diagrams/made) | [`maf`](https://janosh.github.io/diagrams/maf) | -| ![`made.png`](assets/made/made.png) | ![`maf.png`](assets/maf/maf.png) | -| [`materials-informatics-challenges`](https://janosh.github.io/diagrams/materials-informatics-challenges) | [`materials-informatics`](https://janosh.github.io/diagrams/materials-informatics) | -| ![`materials-informatics-challenges.png`](assets/materials-informatics-challenges/materials-informatics-challenges.png) | ![`materials-informatics.png`](assets/materials-informatics/materials-informatics.png) | -| [`matsubara-contour-1`](https://janosh.github.io/diagrams/matsubara-contour-1) | [`matsubara-contour-2`](https://janosh.github.io/diagrams/matsubara-contour-2) | -| ![`matsubara-contour-1.png`](assets/matsubara-contour-1/matsubara-contour-1.png) | ![`matsubara-contour-2.png`](assets/matsubara-contour-2/matsubara-contour-2.png) | -| [`matsubara-contour-3`](https://janosh.github.io/diagrams/matsubara-contour-3) | [`matsubara-contour-4`](https://janosh.github.io/diagrams/matsubara-contour-4) | -| ![`matsubara-contour-3.png`](assets/matsubara-contour-3/matsubara-contour-3.png) | ![`matsubara-contour-4.png`](assets/matsubara-contour-4/matsubara-contour-4.png) | -| [`matsubara-contour-5`](https://janosh.github.io/diagrams/matsubara-contour-5) | [`matsubara-contour-deformation`](https://janosh.github.io/diagrams/matsubara-contour-deformation) | -| ![`matsubara-contour-5.png`](assets/matsubara-contour-5/matsubara-contour-5.png) | ![`matsubara-contour-deformation.png`](assets/matsubara-contour-deformation/matsubara-contour-deformation.png) | -| [`maxwell-boltzmann-distribution`](https://janosh.github.io/diagrams/maxwell-boltzmann-distribution) | [`mexican-hat`](https://janosh.github.io/diagrams/mexican-hat) | -| ![`maxwell-boltzmann-distribution.png`](assets/maxwell-boltzmann-distribution/maxwell-boltzmann-distribution.png) | ![`mexican-hat.png`](assets/mexican-hat/mexican-hat.png) | -| [`ml-activations`](https://janosh.github.io/diagrams/ml-activations) | [`mosfet`](https://janosh.github.io/diagrams/mosfet) | -| ![`ml-activations.png`](assets/ml-activations/ml-activations.png) | ![`mosfet.png`](assets/mosfet/mosfet.png) | -| [`mphil-gantt`](https://janosh.github.io/diagrams/mphil-gantt) | [`nf-coupling-layer`](https://janosh.github.io/diagrams/nf-coupling-layer) | -| ![`mphil-gantt.png`](assets/mphil-gantt/mphil-gantt.png) | ![`nf-coupling-layer.png`](assets/nf-coupling-layer/nf-coupling-layer.png) | -| [`normalizing-flow`](https://janosh.github.io/diagrams/normalizing-flow) | [`one-point`](https://janosh.github.io/diagrams/one-point) | -| ![`normalizing-flow.png`](assets/normalizing-flow/normalizing-flow.png) | ![`one-point.png`](assets/one-point/one-point.png) | -| [`open-string-topologies`](https://janosh.github.io/diagrams/open-string-topologies) | [`operator-orderings`](https://janosh.github.io/diagrams/operator-orderings) | -| ![`open-string-topologies.png`](assets/open-string-topologies/open-string-topologies.png) | ![`operator-orderings.png`](assets/operator-orderings/operator-orderings.png) | -| [`organic-molecule`](https://janosh.github.io/diagrams/organic-molecule) | [`otto-cycle`](https://janosh.github.io/diagrams/otto-cycle) | -| ![`organic-molecule.png`](assets/organic-molecule/organic-molecule.png) | ![`otto-cycle.png`](assets/otto-cycle/otto-cycle.png) | -| [`periodic-table`](https://janosh.github.io/diagrams/periodic-table) | [`physics-mindmap`](https://janosh.github.io/diagrams/physics-mindmap) | -| ![`periodic-table.png`](assets/periodic-table/periodic-table.png) | ![`physics-mindmap.png`](assets/physics-mindmap/physics-mindmap.png) | -| [`pie-physics-chemistry-ml`](https://janosh.github.io/diagrams/pie-physics-chemistry-ml) | [`plane-to-torus`](https://janosh.github.io/diagrams/plane-to-torus) | -| ![`pie-physics-chemistry-ml.png`](assets/pie-physics-chemistry-ml/pie-physics-chemistry-ml.png) | ![`plane-to-torus.png`](assets/plane-to-torus/plane-to-torus.png) | +| [`high-entropy-alloy`](https://janosh.github.io/diagrams/high-entropy-alloy) | [`isotherms`](https://janosh.github.io/diagrams/isotherms) | +| ![`high-entropy-alloy.png`](assets/high-entropy-alloy/high-entropy-alloy.png) | ![`isotherms.png`](assets/isotherms/isotherms.png) | +| [`jensens-inequality`](https://janosh.github.io/diagrams/jensens-inequality) | [`k-space`](https://janosh.github.io/diagrams/k-space) | +| ![`jensens-inequality.png`](assets/jensens-inequality/jensens-inequality.png) | ![`k-space.png`](assets/k-space/k-space.png) | +| [`kohn-sham-cycle`](https://janosh.github.io/diagrams/kohn-sham-cycle) | [`light`](https://janosh.github.io/diagrams/light) | +| ![`kohn-sham-cycle.png`](assets/kohn-sham-cycle/kohn-sham-cycle.png) | ![`light.png`](assets/light/light.png) | +| [`loop`](https://janosh.github.io/diagrams/loop) | [`loops`](https://janosh.github.io/diagrams/loops) | +| ![`loop.png`](assets/loop/loop.png) | ![`loops.png`](assets/loops/loops.png) | +| [`m-theory`](https://janosh.github.io/diagrams/m-theory) | [`made`](https://janosh.github.io/diagrams/made) | +| ![`m-theory.png`](assets/m-theory/m-theory.png) | ![`made.png`](assets/made/made.png) | +| [`maf`](https://janosh.github.io/diagrams/maf) | [`materials-informatics-challenges`](https://janosh.github.io/diagrams/materials-informatics-challenges) | +| ![`maf.png`](assets/maf/maf.png) | ![`materials-informatics-challenges.png`](assets/materials-informatics-challenges/materials-informatics-challenges.png) | +| [`materials-informatics`](https://janosh.github.io/diagrams/materials-informatics) | [`matsubara-contour-1`](https://janosh.github.io/diagrams/matsubara-contour-1) | +| ![`materials-informatics.png`](assets/materials-informatics/materials-informatics.png) | ![`matsubara-contour-1.png`](assets/matsubara-contour-1/matsubara-contour-1.png) | +| [`matsubara-contour-2`](https://janosh.github.io/diagrams/matsubara-contour-2) | [`matsubara-contour-3`](https://janosh.github.io/diagrams/matsubara-contour-3) | +| ![`matsubara-contour-2.png`](assets/matsubara-contour-2/matsubara-contour-2.png) | ![`matsubara-contour-3.png`](assets/matsubara-contour-3/matsubara-contour-3.png) | +| [`matsubara-contour-4`](https://janosh.github.io/diagrams/matsubara-contour-4) | [`matsubara-contour-5`](https://janosh.github.io/diagrams/matsubara-contour-5) | +| ![`matsubara-contour-4.png`](assets/matsubara-contour-4/matsubara-contour-4.png) | ![`matsubara-contour-5.png`](assets/matsubara-contour-5/matsubara-contour-5.png) | +| [`matsubara-contour-deformation`](https://janosh.github.io/diagrams/matsubara-contour-deformation) | [`maxwell-boltzmann-distribution`](https://janosh.github.io/diagrams/maxwell-boltzmann-distribution) | +| ![`matsubara-contour-deformation.png`](assets/matsubara-contour-deformation/matsubara-contour-deformation.png) | ![`maxwell-boltzmann-distribution.png`](assets/maxwell-boltzmann-distribution/maxwell-boltzmann-distribution.png) | +| [`mexican-hat`](https://janosh.github.io/diagrams/mexican-hat) | [`ml-activations`](https://janosh.github.io/diagrams/ml-activations) | +| ![`mexican-hat.png`](assets/mexican-hat/mexican-hat.png) | ![`ml-activations.png`](assets/ml-activations/ml-activations.png) | +| [`momentum-shell`](https://janosh.github.io/diagrams/momentum-shell) | [`mosfet`](https://janosh.github.io/diagrams/mosfet) | +| ![`momentum-shell.png`](assets/momentum-shell/momentum-shell.png) | ![`mosfet.png`](assets/mosfet/mosfet.png) | +| [`nf-coupling-layer`](https://janosh.github.io/diagrams/nf-coupling-layer) | [`normalizing-flow`](https://janosh.github.io/diagrams/normalizing-flow) | +| ![`nf-coupling-layer.png`](assets/nf-coupling-layer/nf-coupling-layer.png) | ![`normalizing-flow.png`](assets/normalizing-flow/normalizing-flow.png) | +| [`one-point`](https://janosh.github.io/diagrams/one-point) | [`open-string-topologies`](https://janosh.github.io/diagrams/open-string-topologies) | +| ![`one-point.png`](assets/one-point/one-point.png) | ![`open-string-topologies.png`](assets/open-string-topologies/open-string-topologies.png) | +| [`operator-orderings`](https://janosh.github.io/diagrams/operator-orderings) | [`organic-molecule`](https://janosh.github.io/diagrams/organic-molecule) | +| ![`operator-orderings.png`](assets/operator-orderings/operator-orderings.png) | ![`organic-molecule.png`](assets/organic-molecule/organic-molecule.png) | +| [`otto-cycle`](https://janosh.github.io/diagrams/otto-cycle) | [`periodic-table`](https://janosh.github.io/diagrams/periodic-table) | +| ![`otto-cycle.png`](assets/otto-cycle/otto-cycle.png) | ![`periodic-table.png`](assets/periodic-table/periodic-table.png) | +| [`physics-mindmap`](https://janosh.github.io/diagrams/physics-mindmap) | [`plane-to-torus`](https://janosh.github.io/diagrams/plane-to-torus) | +| ![`physics-mindmap.png`](assets/physics-mindmap/physics-mindmap.png) | ![`plane-to-torus.png`](assets/plane-to-torus/plane-to-torus.png) | | [`plate-capacitor`](https://janosh.github.io/diagrams/plate-capacitor) | [`poles`](https://janosh.github.io/diagrams/poles) | | ![`plate-capacitor.png`](assets/plate-capacitor/plate-capacitor.png) | ![`poles.png`](assets/poles/poles.png) | | [`potential-triangle`](https://janosh.github.io/diagrams/potential-triangle) | [`propagator-fluctuations`](https://janosh.github.io/diagrams/propagator-fluctuations) | @@ -120,26 +116,26 @@ Have a TikZ image you'd like to share? [Submit a PR](https://github.com/janosh/d | ![`saddle-point.png`](assets/saddle-point/saddle-point.png) | ![`sbs-aktionen.png`](assets/sbs-aktionen/sbs-aktionen.png) | | [`seebeck-effect`](https://janosh.github.io/diagrams/seebeck-effect) | [`self-attention`](https://janosh.github.io/diagrams/self-attention) | | ![`seebeck-effect.png`](assets/seebeck-effect/seebeck-effect.png) | ![`self-attention.png`](assets/self-attention/self-attention.png) | -| [`shell`](https://janosh.github.io/diagrams/shell) | [`sign-plane`](https://janosh.github.io/diagrams/sign-plane) | -| ![`shell.png`](assets/shell/shell.png) | ![`sign-plane.png`](assets/sign-plane/sign-plane.png) | -| [`single-head-attention`](https://janosh.github.io/diagrams/single-head-attention) | [`skip-connection`](https://janosh.github.io/diagrams/skip-connection) | -| ![`single-head-attention.png`](assets/single-head-attention/single-head-attention.png) | ![`skip-connection.png`](assets/skip-connection/skip-connection.png) | -| [`spontaneous-magnetization`](https://janosh.github.io/diagrams/spontaneous-magnetization) | [`tanh`](https://janosh.github.io/diagrams/tanh) | -| ![`spontaneous-magnetization.png`](assets/spontaneous-magnetization/spontaneous-magnetization.png) | ![`tanh.png`](assets/tanh/tanh.png) | -| [`theory-space`](https://janosh.github.io/diagrams/theory-space) | [`thermo-ensemble-trafos`](https://janosh.github.io/diagrams/thermo-ensemble-trafos) | -| ![`theory-space.png`](assets/theory-space/theory-space.png) | ![`thermo-ensemble-trafos.png`](assets/thermo-ensemble-trafos/thermo-ensemble-trafos.png) | -| [`thomson-scattering`](https://janosh.github.io/diagrams/thomson-scattering) | [`tori`](https://janosh.github.io/diagrams/tori) | -| ![`thomson-scattering.png`](assets/thomson-scattering/thomson-scattering.png) | ![`tori.png`](assets/tori/tori.png) | -| [`torus-fundamental-domain`](https://janosh.github.io/diagrams/torus-fundamental-domain) | [`torus`](https://janosh.github.io/diagrams/torus) | -| ![`torus-fundamental-domain.png`](assets/torus-fundamental-domain/torus-fundamental-domain.png) | ![`torus.png`](assets/torus/torus.png) | -| [`two-point-no-cutoff`](https://janosh.github.io/diagrams/two-point-no-cutoff) | [`two-point`](https://janosh.github.io/diagrams/two-point) | -| ![`two-point-no-cutoff.png`](assets/two-point-no-cutoff/two-point-no-cutoff.png) | ![`two-point.png`](assets/two-point/two-point.png) | -| [`unregularized-propagator-diagrams`](https://janosh.github.io/diagrams/unregularized-propagator-diagrams) | [`vae`](https://janosh.github.io/diagrams/vae) | -| ![`unregularized-propagator-diagrams.png`](assets/unregularized-propagator-diagrams/unregularized-propagator-diagrams.png) | ![`vae.png`](assets/vae/vae.png) | -| [`wall`](https://janosh.github.io/diagrams/wall) | [`wetterich-equation`](https://janosh.github.io/diagrams/wetterich-equation) | -| ![`wall.png`](assets/wall/wall.png) | ![`wetterich-equation.png`](assets/wetterich-equation/wetterich-equation.png) | -| [`wyckoff-positions`](https://janosh.github.io/diagrams/wyckoff-positions) | [`zt-vs-n`](https://janosh.github.io/diagrams/zt-vs-n) | -| ![`wyckoff-positions.png`](assets/wyckoff-positions/wyckoff-positions.png) | ![`zt-vs-n.png`](assets/zt-vs-n/zt-vs-n.png) | +| [`sign-plane`](https://janosh.github.io/diagrams/sign-plane) | [`single-head-attention`](https://janosh.github.io/diagrams/single-head-attention) | +| ![`sign-plane.png`](assets/sign-plane/sign-plane.png) | ![`single-head-attention.png`](assets/single-head-attention/single-head-attention.png) | +| [`skip-connection`](https://janosh.github.io/diagrams/skip-connection) | [`spontaneous-magnetization`](https://janosh.github.io/diagrams/spontaneous-magnetization) | +| ![`skip-connection.png`](assets/skip-connection/skip-connection.png) | ![`spontaneous-magnetization.png`](assets/spontaneous-magnetization/spontaneous-magnetization.png) | +| [`tanh`](https://janosh.github.io/diagrams/tanh) | [`theory-space`](https://janosh.github.io/diagrams/theory-space) | +| ![`tanh.png`](assets/tanh/tanh.png) | ![`theory-space.png`](assets/theory-space/theory-space.png) | +| [`thermo-ensemble-trafos`](https://janosh.github.io/diagrams/thermo-ensemble-trafos) | [`thomson-scattering`](https://janosh.github.io/diagrams/thomson-scattering) | +| ![`thermo-ensemble-trafos.png`](assets/thermo-ensemble-trafos/thermo-ensemble-trafos.png) | ![`thomson-scattering.png`](assets/thomson-scattering/thomson-scattering.png) | +| [`tori`](https://janosh.github.io/diagrams/tori) | [`torus-fundamental-domain`](https://janosh.github.io/diagrams/torus-fundamental-domain) | +| ![`tori.png`](assets/tori/tori.png) | ![`torus-fundamental-domain.png`](assets/torus-fundamental-domain/torus-fundamental-domain.png) | +| [`torus`](https://janosh.github.io/diagrams/torus) | [`two-point-no-cutoff`](https://janosh.github.io/diagrams/two-point-no-cutoff) | +| ![`torus.png`](assets/torus/torus.png) | ![`two-point-no-cutoff.png`](assets/two-point-no-cutoff/two-point-no-cutoff.png) | +| [`two-point`](https://janosh.github.io/diagrams/two-point) | [`unregularized-propagator-diagrams`](https://janosh.github.io/diagrams/unregularized-propagator-diagrams) | +| ![`two-point.png`](assets/two-point/two-point.png) | ![`unregularized-propagator-diagrams.png`](assets/unregularized-propagator-diagrams/unregularized-propagator-diagrams.png) | +| [`vae`](https://janosh.github.io/diagrams/vae) | [`wall`](https://janosh.github.io/diagrams/wall) | +| ![`vae.png`](assets/vae/vae.png) | ![`wall.png`](assets/wall/wall.png) | +| [`wetterich-equation`](https://janosh.github.io/diagrams/wetterich-equation) | [`wyckoff-positions`](https://janosh.github.io/diagrams/wyckoff-positions) | +| ![`wetterich-equation.png`](assets/wetterich-equation/wetterich-equation.png) | ![`wyckoff-positions.png`](assets/wyckoff-positions/wyckoff-positions.png) | +| [`zt-vs-n`](https://janosh.github.io/diagrams/zt-vs-n) | | +| ![`zt-vs-n.png`](assets/zt-vs-n/zt-vs-n.png) | | ## Scripts @@ -158,7 +154,7 @@ To run the scripts requires the following dependencies: - [`pngquant`](https://github.com/kornelski/pngquant) (`brew install pngquant`) - [`zopflipng`](https://github.com/google/zopfli) (`brew install zopfli`) -To run `pdf-compressor` directly or to use it as part of the [`render-tikz.py`](scripts/render-tikz.py) pipeline, you need a free public API key from . Pass it to `pdf-compressor` with: +To run `pdf-compressor` directly or to use it as part of the [`render-(typst|tikz).py`](scripts/render-typst.py) pipeline, you need a free public API key from . Pass it to `pdf-compressor` with: ```sh pdf-compressor --set-api-key project_public_7c854a9db0... @@ -169,8 +165,8 @@ pdf-compressor --set-api-key project_public_7c854a9db0... You can cite the [Zenodo record](https://zenodo.org/badge/latestdoi/286220365) using the following BibTeX entry: ```bib -@software{riebesell_tikz_2020, - title = {Collection of standalone TikZ images}, +@software{riebesell_diagrams_2020, + title = {Collection of scientific diagrams}, author = {Riebesell, Janosh and Bringuier, Stefan}, date = {2020-08-09}, year = {2020}, diff --git a/scripts/render-tikz.py b/scripts/render-tikz.py index 2c20272..b87d303 100755 --- a/scripts/render-tikz.py +++ b/scripts/render-tikz.py @@ -22,8 +22,8 @@ if os.getenv("CI") == "true": print("Detected CI=true") if ret_val != 0: - with open(f"{base_path}.log", "r") as f: - print(f.read()) + with open(f"{base_path}.log", mode="r") as file: + print(file.read()) raise SystemExit(f"latexmk failed with return code {ret_val}. See log above.") print("Delete LaTeX auxiliary files") diff --git a/scripts/update-readme-table.py b/scripts/update-readme-table.py index b7c9d3e..69c9711 100644 --- a/scripts/update-readme-table.py +++ b/scripts/update-readme-table.py @@ -6,24 +6,48 @@ from glob import glob from itertools import zip_longest +import yaml + MOD_DIR = os.path.dirname(os.path.abspath(__file__)) ROOT = os.path.dirname(MOD_DIR) TEX_DIR = f"{ROOT}/assets" -with open(f"{ROOT}/site/package.json", "r") as file: +with open(f"{ROOT}/site/package.json", mode="r") as file: site_url = json.load(file)["homepage"] -# Get all .tex and .typ paths +# Get all YAML files +yaml_paths = glob(f"{TEX_DIR}/**/*.yml") +# Also get .tex and .typ paths to check for missing YAML files tex_paths = glob(f"{TEX_DIR}/**/*.tex") typ_paths = glob(f"{TEX_DIR}/**/*.typ") +# Check that every diagram has a YAML file +for diagram_path in tex_paths + typ_paths: + dir_name = os.path.dirname(diagram_path) + yaml_path = f"{dir_name}/{os.path.basename(dir_name)}.yml" + if not os.path.isfile(yaml_path): + raise FileNotFoundError(f"Missing {yaml_path=} for {diagram_path=}") + # Create a dict mapping directory names to file paths # Prefer .typ files over .tex files when both exist -path_dict = {} -for path in sorted(tex_paths + typ_paths): - dir_name = os.path.basename(os.path.dirname(path)) - if dir_name not in path_dict or path.endswith(".typ"): - path_dict[dir_name] = path +path_dict: dict[str, str] = {} +for yaml_path in sorted(yaml_paths): + base_name = os.path.basename(os.path.dirname(yaml_path)) + + # Skip if diagram is marked as hidden in YAML + with open(yaml_path, mode="r") as file: + metadata = yaml.safe_load(file) or {} + if metadata.get("hide"): + continue + + # Look for corresponding .typ or .tex file + typ_path = f"{os.path.dirname(yaml_path)}/{base_name}.typ" + tex_path = f"{os.path.dirname(yaml_path)}/{base_name}.tex" + + if os.path.isfile(typ_path): + path_dict[base_name] = typ_path + elif os.path.isfile(tex_path): + path_dict[base_name] = tex_path # Convert back to sorted list unique_paths = sorted(path_dict.values()) @@ -44,7 +68,7 @@ img_link2 = f"![`{fig2}.png`](assets/{fig2}/{fig2}.png)" if path2 else "" md_table += f"| {img_link1} | {img_link2} |\n" -with open(f"{ROOT}/readme.md", "r") as file: +with open(f"{ROOT}/readme.md", mode="r") as file: readme = file.read() # insert table markdown between "## Images\n" and "## Scripts\n" headings @@ -58,7 +82,7 @@ # update count in "Collection of **110** " readme = re.sub(r"(?<=Collection of \*\*)\d+(?=\*\* )", str(len(unique_paths)), readme) -with open(f"{ROOT}/readme.md", "w") as file: +with open(f"{ROOT}/readme.md", mode="w") as file: file.write(readme) # run pre-commit on readme to format white space in table