I have EPIC methylation with 679491 CpGs and 1073 samples, it ran DNAmGA successfully. But it failed to run DNAmAge, I used fastImp=TRUE . I set clocks =“ Hannum” or “Horvath”. It showed Error in apply(cpgs [, cpgs.in],2, median,na.rm=TRUE): object ‘cpgs.in’ not found
Calls: DNAmAge ->cpgs_imputation—>apply
Execution halted.
If I use fastImp=FALSE, job killed after reaching LSF memory limit . I ran the job on cluster .
Do you have suggestion?
thank you’
I have EPIC methylation with 679491 CpGs and 1073 samples, it ran DNAmGA successfully. But it failed to run DNAmAge, I used fastImp=TRUE . I set clocks =“ Hannum” or “Horvath”. It showed Error in apply(cpgs [, cpgs.in],2, median,na.rm=TRUE): object ‘cpgs.in’ not found
Calls: DNAmAge ->cpgs_imputation—>apply
Execution halted.
If I use fastImp=FALSE, job killed after reaching LSF memory limit . I ran the job on cluster .
Do you have suggestion?
thank you’