fix: point loci lamp notebooks to dtec environment #68
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Test trace | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| environment: test_trace | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install zencode-exec latest | |
| run: | | |
| wget https://github.com/dyne/zenroom/releases/latest/download/zencode-exec | |
| chmod +x zencode-exec | |
| cp zencode-exec /usr/local/bin/ | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| if [ -f pip_requirements.txt ]; then pip install -r pip_requirements.txt; fi | |
| pip install flake8 pytest | |
| pip install zenroom requests notebook papermill plotly | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| env: | |
| IF_KEY: "${{ secrets.SECRETS_KEY }}" | |
| run: | | |
| pytest |