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Copy pathmodules.json
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151 lines (151 loc) · 7.06 KB
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{
"name": "nf-core/capbench",
"homePage": "https://github.com/nf-core/capbench",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bwa/index": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "b2902040b9cb9b7b32b62400f1c024a709bd4812",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio", "modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"fgbio/callduplexconsensusreads": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"fgbio/callmolecularconsensusreads": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"fgbio/collectduplexseqmetrics": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"fgbio/fastqtobam": {
"branch": "master",
"git_sha": "16af45709c1eca0aa9a8378ed790f15696dd7f1e",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"fgbio/filterconsensusreads": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"fgbio/groupreadsbyumi": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"fgbio/zipperbams": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"gatk4/markduplicates": {
"branch": "master",
"git_sha": "a57253204b8f4022edfeaa3ae2f5e2abecd8858b",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"picard/bedtointervallist": {
"branch": "master",
"git_sha": "df124e87c74d8b40285199f8cc20151f5aa57255",
"installed_by": ["modules"]
},
"picard/collecthsmetrics": {
"branch": "master",
"git_sha": "b8e9f7029eb33f21df6d8470ba6d7cc4bc815358",
"installed_by": ["modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "df124e87c74d8b40285199f8cc20151f5aa57255",
"installed_by": ["modules"]
},
"picard/collectwgsmetrics": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"samtools/fastq": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
},
"samtools/index": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["fastq_create_umi_consensus_fgbio"]
}
}
},
"subworkflows": {
"nf-core": {
"fastq_create_umi_consensus_fgbio": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}