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DESCRIPTION
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Package: rrvgo
Type: Package
Title: Reduce + Visualize GO
Version: 1.15.2
Authors@R: c(person("Sergi", "Sayols", email = "[email protected]", role = c("aut", "cre")), person("Sara", "Elmeligy", role = "ctb"))
Description: Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.
URL: https://www.bioconductor.org/packages/rrvgo, https://ssayols.github.io/rrvgo/index.html
License: GPL-3
Encoding: UTF-8
Imports: GOSemSim,
AnnotationDbi,
GO.db,
pheatmap,
ggplot2,
ggrepel,
treemap,
tm,
wordcloud,
shiny,
grDevices,
grid,
stats,
methods,
umap
Suggests:
knitr,
rmarkdown,
BiocStyle,
testthat (>= 2.1.0),
shinydashboard,
DT,
plotly,
heatmaply,
magrittr,
utils,
clusterProfiler,
DOSE,
slam,
org.Ag.eg.db,
org.At.tair.db,
org.Bt.eg.db,
org.Ce.eg.db,
org.Cf.eg.db,
org.Dm.eg.db,
org.Dr.eg.db,
org.EcK12.eg.db,
org.EcSakai.eg.db,
org.Gg.eg.db,
org.Hs.eg.db,
org.Mm.eg.db,
org.Mmu.eg.db,
org.Pt.eg.db,
org.Rn.eg.db,
org.Sc.sgd.db,
org.Ss.eg.db,
org.Xl.eg.db
VignetteBuilder: knitr
RoxygenNote: 7.2.3
biocViews: Annotation, Clustering, GO, Network, Pathways, Software
NeedsCompilation: no