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_pages/plugins/foci-analyzer.md

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4. Segmented nuclei and foci are visualized as overlays on the original images for easy inspection. If desired, foci detection settings (threshold bias, min/max size) can be adapted before processing all input images. A colocalization map is also created when two channels are measured.
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## Installation / Requirements
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**IMPORTANT NOTE**: Currently StarDist does not function with Fiji-Latest, due to a [TensorFlow issue](https://github.com/fiji/fiji/issues/393). For the time being, please use Fiji-Stable: select the 'Stable' distribution next to the large green download button on [https://fiji.sc/](https://fiji.sc/)).
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[Activate](https://imagej.net/update-sites/following) the following Fiji update sites (in the menu bar, via Help -> Update...):
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- Foci-Analyzer
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- StarDist
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- (TensorFlow) Due to a recent Fiji update, StarDist [may require the TensorFlow Update Site](https://forum.image.sc/t/stardist-error-since-update/107729) to function properly.
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**IMPORTANT NOTE**: Currently StarDist does not function with Fiji-Latest, due to a [TensorFlow issue](https://github.com/fiji/fiji/issues/393). For the time being, please use Fiji-Stable: select the 'Stable' distribution next to the large green download button on [https://fiji.sc/](https://fiji.sc/)).
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Run Foci Analyzer from the Fiji menu: `Plugins -> Foci Analyzer -> Foci Analyzer`.
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`Combine result files` can be used to pool output `.tsv` files into a single file/table.
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