fastq

[ptoru001]

hi igor,

im trying to run a wes for one sample that was processed by azenta...i uploaded all the required docs for the run and i am getting this error:

[torunp01@bigpurple-ln3 twofortyeight]$ sns/run wes
project dir: /gpfs/data/hackerlab/twofortyeight
code dir: /gpfs/data/hackerlab/twofortyeight/sns
logs dir: /gpfs/data/hackerlab/twofortyeight/logs-sbatch

fix-csv.sh ERROR: file /gpfs/data/hackerlab/twofortyeight/samples.fastq-raw.csv does not exist

when i look at the logs-sbatch it shows: total 0

thank you for your help
pedro

[igordot]

According to the error, you don't have samples.fastq-raw.csv. Did you run the gather-fastqs step?

[ptoru001]

i got it igor thank you..