diff --git a/R/msigdbr.R b/R/msigdbr.R index bfe4ca0..e74188e 100644 --- a/R/msigdbr.R +++ b/R/msigdbr.R @@ -12,6 +12,11 @@ #' #' Mouse MSigDB includes gene sets curated from mouse-centric datasets and specified in native mouse gene identifiers, eliminating the need for ortholog mapping. #' +#' To access the full dataset, please install the msigdbdf package (not available on CRAN): +#' ``` +#' install.packages("msigdbdf", repos = "https://igordot.r-universe.dev") +#' ``` +#' #' @param species Species name for output genes, such as `"Homo sapiens"` or `"Mus musculus"`. Use `msigdbr_species()` for available options. #' @param db_species Species abbreviation for the human or mouse databases (`"HS"` or `"MM"`). #' @param collection Collection abbreviation, such as `"H"` or `"C1"`. Use `msigdbr_collections()` for the available options. diff --git a/R/zzz.R b/R/zzz.R index aa11bb7..70cc6af 100644 --- a/R/zzz.R +++ b/R/zzz.R @@ -1,7 +1,7 @@ .onAttach <- function(libname, pkgname) { if (!requireNamespace("msigdbdf", quietly = TRUE)) { packageStartupMessage( - "To access all the data, please install the 'msigdbdf' package with:\n", + "For full functionality, please install the 'msigdbdf' package with:\n", "install.packages('msigdbdf', repos = 'https://igordot.r-universe.dev')" ) } diff --git a/man/msigdbr.Rd b/man/msigdbr.Rd index 431d309..55ea033 100644 --- a/man/msigdbr.Rd +++ b/man/msigdbr.Rd @@ -42,6 +42,11 @@ The versioning convention of MSigDB is in the format \code{Year.Release.Species} The genes within each gene set may originate from a species different from the database target species as indicated by the \code{gs_source_species} and \code{db_target_species} fields. Mouse MSigDB includes gene sets curated from mouse-centric datasets and specified in native mouse gene identifiers, eliminating the need for ortholog mapping. + +To access the full dataset, please install the msigdbdf package (not available on CRAN): + +\if{html}{\out{