diff --git a/src/portal_visualization/builders/imaging_builders.py b/src/portal_visualization/builders/imaging_builders.py index feef8cd..79aa65f 100644 --- a/src/portal_visualization/builders/imaging_builders.py +++ b/src/portal_visualization/builders/imaging_builders.py @@ -248,7 +248,7 @@ def __init__(self, entity, groups_token, assets_endpoint, **kwargs): self.view_type = KAGGLE_IMAGE_VIEW_TYPE # Needed to adjust to various directory structures. For older datasets, the image pyramids will be present in - # either 'processed_microscopy' , 'processedMicroscopy' while newer datasets have lab_processed as directory. + # 'processed_microscopy' or 'processedMicroscopy' while newer datasets are listed under lab_processed. image_dir = SEGMENTATION_SUPPORT_IMAGE_SUBDIR file_paths_found = self._get_file_paths() diff --git a/src/portal_visualization/constants.py b/src/portal_visualization/constants.py index cb18d2a..f9b9c2d 100644 --- a/src/portal_visualization/constants.py +++ b/src/portal_visualization/constants.py @@ -7,5 +7,7 @@ "dm": 10 } -# To filter base image pyramids when finding segmentation mask images (kaggle-1, kaggle-2) +# The base image pyramids for kaggle-1 and kaggle-2 may have various directory structures depending +# upon when they were processed. For older datasets, the image pyramids will be present +# either in 'processed_microscopy', or 'processedMicroscopy' while newer datasets will be listed under lab_processed. base_image_dirs = ['lab_processed', 'processed_microscopy', 'processedMicroscopy']