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Installation.md

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Install Docker

Here you can find instructions how to install Docker for Ubuntu: https://docs.docker.com/install/linux/docker-ce/ubuntu/

Here you can find instructions how to install Docker for Mac: https://docs.docker.com/docker-for-mac/install/#install-and-run-docker-for-mac

Here you can download Docker for Windows: https://store.docker.com/editions/community/docker-ce-desktop-windows

Install git and R

Ubuntu/Debian Linux

Run this command to install git on a Ubuntu/Debian Linux system:

sudo apt install git

To install R, run:

sudo echo "deb http://<my.favorite.cran.mirror>/bin/linux/ubuntu <my.ubuntu.version>/" | sudo tee -a /etc/apt/sources.list
/sources.list
sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
sudo apt update
sudo apt install r-base

To install the latest R version on Ubuntu 16.04 from CRAN cloud, the first line should be:

sudo echo "deb http://cloud.r-project.org/bin/linux/ubuntu xenial/" | sudo tee -a /etc/apt/sources.list

Mac

And the same for Mac users. If you still don't have brew, please install it, it's what you want:

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

And now, install git and R:

brew install git
brew install r

To update R:

brew install r

Install missing R packages

If automatic installation fails, you will need to install missing packages manually (see the full list here). In general, command

install.packages(package_name, dependencies = T)

should work. If you are working with libraries installed in a separate, non-default folder, add the path to this folder:

install.packages(package_name, dependencies = T, lib = PATH_TO_LIB)