What type of data change are you requesting?
attribute label
assembly_level
Description of request
I've noticed that some species with chromosome-level genomes are labelled as 'scaffold' rather than 'chromosome'. I think this stems from hap2 being picked rather than hap1 which from talking to Cibele, is due to how refseq handles the annotations.
It would be great if somehow the chromosome status could be picked rather than scaffold so that these species aren't missed when searching for species with chromosome-level assemblies.
Best wishes,
Charlotte
New values
Perhaps something like:
refseq+complete genome > refseq+chromosome > chromosome > refseq+complete genome > refseq scaffold > scaffold > refseq +contig > contig
Biologically restricted
No response
Reference
NA
Additional context
An example can be found here: https://goat.genomehubs.org/record?recordId=113342&result=taxon&taxonomy=ncbi#Melitaea%20phoebe
What type of data change are you requesting?
attribute label
assembly_level
Description of request
I've noticed that some species with chromosome-level genomes are labelled as 'scaffold' rather than 'chromosome'. I think this stems from hap2 being picked rather than hap1 which from talking to Cibele, is due to how refseq handles the annotations.
It would be great if somehow the chromosome status could be picked rather than scaffold so that these species aren't missed when searching for species with chromosome-level assemblies.
Best wishes,
Charlotte
New values
Perhaps something like:
refseq+complete genome > refseq+chromosome > chromosome > refseq+complete genome > refseq scaffold > scaffold > refseq +contig > contig
Biologically restricted
No response
Reference
NA
Additional context
An example can be found here: https://goat.genomehubs.org/record?recordId=113342&result=taxon&taxonomy=ncbi#Melitaea%20phoebe