From 994e4f98fcd9e09313b2f0e0d200617ef20e5b1e Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Wed, 8 Jan 2025 17:11:18 +0800
Subject: [PATCH 1/9] Update IC links

---
 .../ELBDM/DiskHeating/download_ic.sh          | 16 +++++++++-----
 .../ELBDM/HaloMerger/download_ic.sh           | 13 ++++++-----
 .../ELBDM/IsolatedHalo/download_ic.sh         | 16 +++++++++-----
 .../Hydro/AGORA_IsolatedGalaxy/download_ic.sh | 22 ++++++++++++++-----
 .../Hydro/ClusterMerger/download_ic.sh        | 15 +++++++++----
 5 files changed, 55 insertions(+), 27 deletions(-)

diff --git a/example/test_problem/ELBDM/DiskHeating/download_ic.sh b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
index 34df8e4e4d..c3cfc06d88 100644
--- a/example/test_problem/ELBDM/DiskHeating/download_ic.sh
+++ b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
@@ -1,9 +1,13 @@
-filename=disk-heating-ic
+#!/bin/bash
 
-curl https://girder.hub.yt/api/v1/item/6645cffcff473673ea91b24d/download -o ${filename}.tgz
-tar -zxvf ${filename}.tgz
-rm ${filename}.tgz
-ln -s ${filename}/UM_IC_0.4_M7 UM_IC
-ln -s ${filename}/PAR_IC_0.4_M7_low_res PAR_IC
+LOCAL_FILENAME="disk-heating-ic"
+FILE_ID="677dd2d0999605c485c8de8f"
 
+# 1 download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tgz"
 
+# 2. unzip and link
+tar -zxvf ${LOCAL_FILENAME}.tgz
+rm ${LOCAL_FILENAME}.tgz
+ln -s ${LOCAL_FILENAME}/UM_IC_0.4_M7 UM_IC
+ln -s ${LOCAL_FILENAME}/PAR_IC_0.4_M7_low_res PAR_IC
diff --git a/example/test_problem/ELBDM/HaloMerger/download_ic.sh b/example/test_problem/ELBDM/HaloMerger/download_ic.sh
index bea2af5a30..021b766c9a 100644
--- a/example/test_problem/ELBDM/HaloMerger/download_ic.sh
+++ b/example/test_problem/ELBDM/HaloMerger/download_ic.sh
@@ -1,8 +1,11 @@
-filename=HALO_IC_m22_1_Mh_4e9
-link=https://girder.hub.yt/api/v1/item/65e5251f1613cd89a1dfe902/download
+#!/bin/bash
 
+LOCAL_FILENAME="HALO_IC_m22_1_Mh_4e9"
+FILE_ID="677cc8db999605c485c8de83"
 
-curl ${link} -o ${filename}
+# 1. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-ln -s ${filename} HALO_IC_Halo1
-ln -s ${filename} HALO_IC_Halo2
+# 2. link
+ln -s ${LOCAL_FILENAME} HALO_IC_Halo1
+ln -s ${LOCAL_FILENAME} HALO_IC_Halo2
diff --git a/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh b/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
index 3ed46f02dd..ec9fa64dcc 100644
--- a/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
+++ b/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
@@ -1,8 +1,12 @@
-filename=UM_IC_run05-halo08-lv4
-link=https://use.yt/upload/d75aa595
+#!/bin/bash
 
-curl -L ${link} -o ${filename}.tgz
-tar -zxvf ${filename}.tgz
-rm ${filename}.tgz
+LOCAL_FILENAME="UM_IC_run05-halo08-lv4"
+FILE_ID="677cbad6999605c485c8de77"
 
-ln -s ${filename} UM_IC
+# 1. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tgz"
+
+# 2. unzip and link
+tar -zxvf ${LOCAL_FILENAME}.tgz
+rm ${LOCAL_FILENAME}.tgz
+ln -s ${LOCAL_FILENAME} UM_IC
diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
index a2bc16e972..16cecd044a 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
@@ -1,6 +1,16 @@
-wget --no-check-certificate -O ./LOW.tar.gz https://www.dropbox.com/sh/1xzt1rysy9v3a9l/AAAMlJBQG1OQFW4cjhp11Ex6a/LOW.tar.gz?dl=1
-wget https://bitbucket.org/grackle/grackle/raw/default/input/CloudyData_UVB=HM2012.h5
-tar xzvf LOW.tar.gz
-mv LOW/*.dat ./
-rmdir LOW
-rm LOW.tar.gz
+#!/bin/bash
+
+LOCAL_FILENAME1="LOW"
+LOCAL_FILENAME2="CloudyData_UVB=HM2012.h5"
+FILE_ID1="677ca225999605c485c8de6f"
+FILE_ID2="677ca211999605c485c8de6c"
+
+# 1. download
+#curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
+#curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
+
+# 2. unzip
+tar xzvf ${LOCAL_FILENAME1}.tar.gz
+mv ${LOCAL_FILENAME1}/*.dat ./
+rmdir ${LOCAL_FILENAME1}
+rm ${LOCAL_FILENAME1}.tar.gz
diff --git a/example/test_problem/Hydro/ClusterMerger/download_ic.sh b/example/test_problem/Hydro/ClusterMerger/download_ic.sh
index a77f72155e..c450069388 100644
--- a/example/test_problem/Hydro/ClusterMerger/download_ic.sh
+++ b/example/test_problem/Hydro/ClusterMerger/download_ic.sh
@@ -1,4 +1,11 @@
-filename=gamer_ic_merging_cluster.tgz
-curl -L https://use.yt/upload/cceea6c4 -o $filename
-tar -zxvf $filename
-rm $filename
+#!/bin/bash
+
+LOCAL_FILENAME="gamer_ic_merging_cluster.tgz"
+FILE_ID="677caaec999605c485c8de74"
+
+# 1. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tar.gz"
+
+# 2. unzip
+tar -zxvf ${LOCAL_FILENAME}
+rm ${LOCAL_FILENAME}

From 5c05b8640cdea38504e50c975144cb6017e8f822 Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Wed, 8 Jan 2025 17:43:58 +0800
Subject: [PATCH 2/9] Uncomment the curl

---
 .../test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh    | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
index 16cecd044a..193bb41aed 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic.sh
@@ -6,8 +6,8 @@ FILE_ID1="677ca225999605c485c8de6f"
 FILE_ID2="677ca211999605c485c8de6c"
 
 # 1. download
-#curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
-#curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
+curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
+curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
 
 # 2. unzip
 tar xzvf ${LOCAL_FILENAME1}.tar.gz

From 8a6e183cd5620781ae8b2a71e3e638d3f7fe925d Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Fri, 10 Jan 2025 16:42:45 +0800
Subject: [PATCH 3/9] Update link of LSS

---
 example/test_problem/ELBDM/LSS/download_ic.sh     | 13 +++++++++----
 .../ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh    | 13 +++++++++----
 .../ELBDM/LSS_Hybrid/download_light_halo_ic.sh    | 15 +++++++++++----
 .../download_spectral_interpolation_tables.sh     | 15 +++++++++++----
 4 files changed, 40 insertions(+), 16 deletions(-)

diff --git a/example/test_problem/ELBDM/LSS/download_ic.sh b/example/test_problem/ELBDM/LSS/download_ic.sh
index b27e678417..a55d45b7b6 100644
--- a/example/test_problem/ELBDM/LSS/download_ic.sh
+++ b/example/test_problem/ELBDM/LSS/download_ic.sh
@@ -1,5 +1,10 @@
-filename=Music_InitCondition_z3200_L1.4_N0256_s1002
-link=https://use.yt/upload/4dec54c9
+#!/bin/bash
 
-curl -L ${link} -o ${filename}
-ln -s ${filename} UM_IC
+LOCAL_FILENAME="Music_InitCondition_z3200_L1.4_N0256_s1002"
+FILE_ID="6780d8d6999605c485c8dea0"
+
+# 1. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
+
+# 2. link
+ln -s ${LOCAL_FILENAME} UM_IC
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
index 8d03ee68cf..f3cb8ee79f 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
@@ -1,7 +1,12 @@
-filename=Music_InitCondition_z99_L2.8_N0256_HeavyHalo
-link=https://use.yt/upload/4587e2e6
+#!/bin/bash
 
-curl -L ${link} -o ${filename}
-ln -sf ${filename} UM_IC_wave_heavy
+LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0256_HeavyHalo"
+FILE_ID="6780d9d2999605c485c8dea9"
+
+# 1. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
+
+# 2. link
+ln -sf ${LOCAL_FILENAME} UM_IC_wave_heavy
 python3 elbdm_wave_to_hybrid_IC.py -input UM_IC_wave_heavy -output UM_IC_hybrid_heavy -resolution 256
 ln -sf UM_IC_hybrid_heavy UM_IC
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
index ca91549205..3f3a127fcd 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
@@ -1,9 +1,16 @@
-filename=Music_InitCondition_z99_L2.8_N0064_LightHalo
-link=https://use.yt/upload/a67d8dd1
+#!/bin/bash
 
+LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0064_LightHalo"
+FILE_ID="6780d97e999605c485c8dea6"
+
+# 1. clean
 rm UM_IC*
-curl -L ${link} -o ${filename}
-python3 elbdm_rescale_periodic_IC.py -input ${filename} -output Music_InitCondition_z99_L2.8_N0256_LightHalo -n_in 64 -n_out 256
+
+# 2. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
+
+# 3. link
+python3 elbdm_rescale_periodic_IC.py -input ${LOCAL_FILENAME} -output Music_InitCondition_z99_L2.8_N0256_LightHalo -n_in 64 -n_out 256
 ln -sf Music_InitCondition_z99_L2.8_N0256_LightHalo UM_IC_wave_light
 python3 elbdm_wave_to_hybrid_IC.py -input UM_IC_wave_light -output UM_IC_hybrid_light -resolution 256
 ln -sf UM_IC_hybrid_light UM_IC
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
index 211c7a4470..c8025b7ce7 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
@@ -1,6 +1,13 @@
-filename=spectral_tables.zip
-link=https://use.yt/upload/66f39405
+#!/bin/bash
 
+LOCAL_FILENAME="spectral_tables.zip"
+FILE_ID="6780d950999605c485c8dea3"
+
+# 1. clean
 rm -r spectral_tables*
-curl -L ${link} -o ${filename}
-unzip ${filename}
+
+# 2. download
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
+
+# 3. unzip
+unzip ${LOCAL_FILENAME}

From 97c77cb767e2f811dc28f211c32b1728189349fe Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Tue, 21 Jan 2025 17:39:01 +0800
Subject: [PATCH 4/9] Add sha256sum check

---
 .../ELBDM/DiskHeating/download_ic.sh          |  6 +++++-
 .../LSS_Hybrid/download_heavy_halo_ic.sh      |  6 +++++-
 .../LSS_Hybrid/download_light_halo_ic.sh      |  6 +++++-
 .../download_spectral_interpolation_tables.sh |  6 +++++-
 .../download_ic_high_res.sh                   | 19 +++++++++++++------
 .../download_ic_low_res.sh                    | 14 ++++++++++----
 .../test_problem/Hydro/CDM_LSS/download_ic.sh | 11 ++++-------
 .../Hydro/ClusterMerger/download_ic.sh        |  8 ++++++--
 8 files changed, 53 insertions(+), 23 deletions(-)

diff --git a/example/test_problem/ELBDM/DiskHeating/download_ic.sh b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
index 5168536408..e6f5db2db0 100644
--- a/example/test_problem/ELBDM/DiskHeating/download_ic.sh
+++ b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
@@ -2,11 +2,15 @@
 
 LOCAL_FILENAME="disk-heating-ic"
 FILE_ID="677dd2d0999605c485c8de8f"
+FILE_SHA256="5c981ffe1f0cd85237b51e9e2872e8047dad8a87e0419575255e4c1d5d8cf17a"
 
 # 1 download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tgz"
 
-# 2. unzip and link
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME}.tgz | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}.tgz"
+
+# 3. unzip and link
 tar -zxvf ${LOCAL_FILENAME}.tgz
 rm ${LOCAL_FILENAME}.tgz
 ln -s ${LOCAL_FILENAME}/UM_IC_0.4_M7 UM_IC
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
index f3cb8ee79f..a34517f0ea 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
@@ -2,11 +2,15 @@
 
 LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0256_HeavyHalo"
 FILE_ID="6780d9d2999605c485c8dea9"
+FILE_SHA256="2f15920763e6189abd81b6f39fd283ebeeb6b6b90dbbce0eb898d098ef4b497d"
 
 # 1. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 2. link
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 3. link
 ln -sf ${LOCAL_FILENAME} UM_IC_wave_heavy
 python3 elbdm_wave_to_hybrid_IC.py -input UM_IC_wave_heavy -output UM_IC_hybrid_heavy -resolution 256
 ln -sf UM_IC_hybrid_heavy UM_IC
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
index 3f3a127fcd..622a974726 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
@@ -2,6 +2,7 @@
 
 LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0064_LightHalo"
 FILE_ID="6780d97e999605c485c8dea6"
+FILE_SHA256="89e1626405e38e3bd756167e3c06719f193456aa8e7d210ddfd13246df0e1a91"
 
 # 1. clean
 rm UM_IC*
@@ -9,7 +10,10 @@ rm UM_IC*
 # 2. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 3. link
+# 3. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 4. link
 python3 elbdm_rescale_periodic_IC.py -input ${LOCAL_FILENAME} -output Music_InitCondition_z99_L2.8_N0256_LightHalo -n_in 64 -n_out 256
 ln -sf Music_InitCondition_z99_L2.8_N0256_LightHalo UM_IC_wave_light
 python3 elbdm_wave_to_hybrid_IC.py -input UM_IC_wave_light -output UM_IC_hybrid_light -resolution 256
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
index c8025b7ce7..81dedce0d1 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
@@ -2,6 +2,7 @@
 
 LOCAL_FILENAME="spectral_tables.zip"
 FILE_ID="6780d950999605c485c8dea3"
+FILE_SHA256="304fb4d098d6ad6f6533f137fc78a4d05d2abf7c239392be29f694503410247f"
 
 # 1. clean
 rm -r spectral_tables*
@@ -9,5 +10,8 @@ rm -r spectral_tables*
 # 2. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 3. unzip
+# 3. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 4. unzip
 unzip ${LOCAL_FILENAME}
diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
index 7aae3cb6cd..e3a042c97d 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
@@ -3,10 +3,17 @@ LOCAL_FILENAME1="HI"
 LOCAL_FILENAME2="CloudyData_UVB=HM2012.h5"
 FILE_ID1="677e4757999605c485c8de92"
 FILE_ID2="677ca211999605c485c8de6c"
+FILE_SHA256_1="8ab54870656585b280b3085c6aa8d9e62f6969ba05123fc25c9a7549bcdd32a2"
+FILE_SHA256_2="8715f1b39e90a7296ec2adcd442fa13a3d45d2ad021c6fa2fae9e4ab7a4700b2"
+
 
 # file download
-curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
-curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
+#curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
+#curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
+
+# compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}"
+! [ `sha256sum ${LOCAL_FILENAME2}        | awk '{print $1}'` = "${FILE_SHA256_2}" ] && echo "File broken: ${LOCAL_FILENAME2}"
 
 # file unzip
 tar xzvf ${LOCAL_FILENAME1}.tar.gz
@@ -15,7 +22,7 @@ rm -rf ${LOCAL_FILENAME1}
 rm ${LOCAL_FILENAME1}.tar.gz
 
 # Input_* soft links
-ln -s ./Input_Options/Input__Flag_Jeans.high-res Input__Flag_Jeans
-ln -s ./Input_Options/Input__Flag_ParMassCell.high-res Input__Flag_ParMassCell
-ln -s ./Input_Options/Input__Flag_Rho.high-res Input__Flag_Rho
-ln -s ./Input_Options/Input__Parameter.high-res Input__Parameter
+ln -fs ./Input_Options/Input__Flag_Jeans.high-res Input__Flag_Jeans
+ln -fs ./Input_Options/Input__Flag_ParMassCell.high-res Input__Flag_ParMassCell
+ln -fs ./Input_Options/Input__Flag_Rho.high-res Input__Flag_Rho
+ln -fs ./Input_Options/Input__Parameter.high-res Input__Parameter
diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
index 6d211b60da..a7518ba555 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
@@ -4,11 +4,17 @@ LOCAL_FILENAME1="LOW"
 LOCAL_FILENAME2="CloudyData_UVB=HM2012.h5"
 FILE_ID1="677ca225999605c485c8de6f"
 FILE_ID2="677ca211999605c485c8de6c"
+FILE_SHA256_1="8fd18d016f5af665d31d853a394c9089503df225f4c256eb1163c9a7b4e94644"
+FILE_SHA256_2="8715f1b39e90a7296ec2adcd442fa13a3d45d2ad021c6fa2fae9e4ab7a4700b2"
 
 # file download
 curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
 curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
 
+# compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}"
+! [ `sha256sum ${LOCAL_FILENAME2}        | awk '{print $1}'` = "${FILE_SHA256_2}" ] && echo "File broken: ${LOCAL_FILENAME2}"
+
 # file unzip
 tar xzvf ${LOCAL_FILENAME1}.tar.gz
 mv ${LOCAL_FILENAME1}/*.dat ./
@@ -16,7 +22,7 @@ rmdir ${LOCAL_FILENAME1}
 rm ${LOCAL_FILENAME1}.tar.gz
 
 # Input_* soft links
-ln -s ./Input_Options/Input__Flag_Jeans.low-res Input__Flag_Jeans
-ln -s ./Input_Options/Input__Flag_ParMassCell.low-res Input__Flag_ParMassCell
-ln -s ./Input_Options/Input__Flag_Rho.low-res Input__Flag_Rho
-ln -s ./Input_Options/Input__Parameter.low-res Input__Parameter
+ln -fs ./Input_Options/Input__Flag_Jeans.low-res Input__Flag_Jeans
+ln -fs ./Input_Options/Input__Flag_ParMassCell.low-res Input__Flag_ParMassCell
+ln -fs ./Input_Options/Input__Flag_Rho.low-res Input__Flag_Rho
+ln -fs ./Input_Options/Input__Parameter.low-res Input__Parameter
diff --git a/example/test_problem/Hydro/CDM_LSS/download_ic.sh b/example/test_problem/Hydro/CDM_LSS/download_ic.sh
index ec3a9b39d3..549b3eb456 100644
--- a/example/test_problem/Hydro/CDM_LSS/download_ic.sh
+++ b/example/test_problem/Hydro/CDM_LSS/download_ic.sh
@@ -2,13 +2,10 @@
 
 LOCAL_FILENAME="PAR_IC"
 FILE_ID="677c92db999605c485c8de69"
+FILE_SHA256="46e27324953bcd7b4eecaecd395b6cf6ccbf662e65a12c935b3823abd8119be3"
 
-# 1. Download through `curl`
+# 1. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o ${LOCAL_FILENAME}
 
-# 2. download through `girder`
-API_URL="https://girder.hub.yt/api/v1"
-
-# girder-cli --api-url ${API_URL} download --parent-type item ${FILE_ID} temp
-# mv temp/${LOCAL_FILENAME} ./
-# rmdir temp
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
diff --git a/example/test_problem/Hydro/ClusterMerger/download_ic.sh b/example/test_problem/Hydro/ClusterMerger/download_ic.sh
index c450069388..61bc0635d3 100644
--- a/example/test_problem/Hydro/ClusterMerger/download_ic.sh
+++ b/example/test_problem/Hydro/ClusterMerger/download_ic.sh
@@ -2,10 +2,14 @@
 
 LOCAL_FILENAME="gamer_ic_merging_cluster.tgz"
 FILE_ID="677caaec999605c485c8de74"
+FILE_SHA256="a233a892818504cf15e188bca862e22250bb1f3e09155740e45d272e4ab5f1c1"
 
 # 1. download
-curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tar.gz"
+curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 2. unzip
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 3. unzip
 tar -zxvf ${LOCAL_FILENAME}
 rm ${LOCAL_FILENAME}

From f186a94596f42f942d0c80c7cf5fdf0fd5f71220 Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Tue, 21 Jan 2025 17:42:01 +0800
Subject: [PATCH 5/9] Bugfix

---
 example/test_problem/ELBDM/DiskHeating/download_ic.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/example/test_problem/ELBDM/DiskHeating/download_ic.sh b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
index e6f5db2db0..fe24da5b58 100644
--- a/example/test_problem/ELBDM/DiskHeating/download_ic.sh
+++ b/example/test_problem/ELBDM/DiskHeating/download_ic.sh
@@ -14,4 +14,4 @@ curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tgz"
 tar -zxvf ${LOCAL_FILENAME}.tgz
 rm ${LOCAL_FILENAME}.tgz
 ln -s ${LOCAL_FILENAME}/UM_IC_0.4_M7 UM_IC
-ln -s ${filename}/PAR_IC_0.4_M7_low_res DiskHeatingParticleIC
+ln -s ${LOCAL_FILENAME}/PAR_IC_0.4_M7_low_res DiskHeatingParticleIC

From 0b5260542230afdfdf4bb4952b1d1207b5e52f95 Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Wed, 22 Jan 2025 11:53:27 +0800
Subject: [PATCH 6/9] Add sha256 check

---
 example/test_problem/ELBDM/HaloMerger/download_ic.sh   | 6 +++++-
 example/test_problem/ELBDM/IsolatedHalo/download_ic.sh | 6 +++++-
 example/test_problem/ELBDM/LSS/download_ic.sh          | 6 +++++-
 3 files changed, 15 insertions(+), 3 deletions(-)

diff --git a/example/test_problem/ELBDM/HaloMerger/download_ic.sh b/example/test_problem/ELBDM/HaloMerger/download_ic.sh
index 021b766c9a..24b7398f2a 100644
--- a/example/test_problem/ELBDM/HaloMerger/download_ic.sh
+++ b/example/test_problem/ELBDM/HaloMerger/download_ic.sh
@@ -2,10 +2,14 @@
 
 LOCAL_FILENAME="HALO_IC_m22_1_Mh_4e9"
 FILE_ID="677cc8db999605c485c8de83"
+FILE_SHA256="acbd85842de65ff2360c7f3a1d1101c6f4f8939f430c3f61b8bc5f6f9a72fe94"
 
 # 1. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 2. link
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 3. link
 ln -s ${LOCAL_FILENAME} HALO_IC_Halo1
 ln -s ${LOCAL_FILENAME} HALO_IC_Halo2
diff --git a/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh b/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
index ec9fa64dcc..c417b94e6c 100644
--- a/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
+++ b/example/test_problem/ELBDM/IsolatedHalo/download_ic.sh
@@ -2,11 +2,15 @@
 
 LOCAL_FILENAME="UM_IC_run05-halo08-lv4"
 FILE_ID="677cbad6999605c485c8de77"
+FILE_SHA256="7ed91ba48a9aec139e0574629b689090ae43496fb957c6822c7ec1bd1217e22e"
 
 # 1. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}.tgz"
 
-# 2. unzip and link
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME}.tgz | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}.tgz"
+
+# 3. unzip and link
 tar -zxvf ${LOCAL_FILENAME}.tgz
 rm ${LOCAL_FILENAME}.tgz
 ln -s ${LOCAL_FILENAME} UM_IC
diff --git a/example/test_problem/ELBDM/LSS/download_ic.sh b/example/test_problem/ELBDM/LSS/download_ic.sh
index a55d45b7b6..fa6c23f98d 100644
--- a/example/test_problem/ELBDM/LSS/download_ic.sh
+++ b/example/test_problem/ELBDM/LSS/download_ic.sh
@@ -2,9 +2,13 @@
 
 LOCAL_FILENAME="Music_InitCondition_z3200_L1.4_N0256_s1002"
 FILE_ID="6780d8d6999605c485c8dea0"
+FILE_SHA256="114fd2a0d37e70ba7bd06907c878bd1c752ea76882ad1833af165696eef8cf9d"
 
 # 1. download
 curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
-# 2. link
+# 2. compare sha256sum
+! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
+
+# 3. link
 ln -s ${LOCAL_FILENAME} UM_IC

From d76161d3f883b377a35c86cfdeec01e44f0ca842 Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Wed, 22 Jan 2025 11:59:32 +0800
Subject: [PATCH 7/9] Minor

---
 .../Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh      | 6 +++---
 .../Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh       | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
index e3a042c97d..ef34aa20d1 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_high_res.sh
@@ -8,11 +8,11 @@ FILE_SHA256_2="8715f1b39e90a7296ec2adcd442fa13a3d45d2ad021c6fa2fae9e4ab7a4700b2"
 
 
 # file download
-#curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
-#curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
+curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.gz"
+curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
 
 # compare sha256sum
-! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}"
+! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}.tar.gz"
 ! [ `sha256sum ${LOCAL_FILENAME2}        | awk '{print $1}'` = "${FILE_SHA256_2}" ] && echo "File broken: ${LOCAL_FILENAME2}"
 
 # file unzip
diff --git a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
index a7518ba555..44d3cc0bd7 100644
--- a/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
+++ b/example/test_problem/Hydro/AGORA_IsolatedGalaxy/download_ic_low_res.sh
@@ -12,7 +12,7 @@ curl https://hub.yt/api/v1/item/${FILE_ID1}/download -o "${LOCAL_FILENAME1}.tar.
 curl https://hub.yt/api/v1/item/${FILE_ID2}/download -o "${LOCAL_FILENAME2}"
 
 # compare sha256sum
-! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}"
+! [ `sha256sum ${LOCAL_FILENAME1}.tar.gz | awk '{print $1}'` = "${FILE_SHA256_1}" ] && echo "File broken: ${LOCAL_FILENAME1}.tar.gz"
 ! [ `sha256sum ${LOCAL_FILENAME2}        | awk '{print $1}'` = "${FILE_SHA256_2}" ] && echo "File broken: ${LOCAL_FILENAME2}"
 
 # file unzip

From 60cc8131ce56eeaa69feda9f1ddc91610cf27abd Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Thu, 23 Jan 2025 17:52:54 +0800
Subject: [PATCH 8/9] Update z information

---
 .../test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh | 2 +-
 .../test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh | 6 +++---
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
index a34517f0ea..cdf8f8557f 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_heavy_halo_ic.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0256_HeavyHalo"
+LOCAL_FILENAME="Music_InitCondition_z100_L2.8_N0256_HeavyHalo"
 FILE_ID="6780d9d2999605c485c8dea9"
 FILE_SHA256="2f15920763e6189abd81b6f39fd283ebeeb6b6b90dbbce0eb898d098ef4b497d"
 
diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
index 622a974726..0143dd78d6 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_light_halo_ic.sh
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-LOCAL_FILENAME="Music_InitCondition_z99_L2.8_N0064_LightHalo"
+LOCAL_FILENAME="Music_InitCondition_z100_L2.8_N0064_LightHalo"
 FILE_ID="6780d97e999605c485c8dea6"
 FILE_SHA256="89e1626405e38e3bd756167e3c06719f193456aa8e7d210ddfd13246df0e1a91"
 
@@ -14,7 +14,7 @@ curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 ! [ `sha256sum ${LOCAL_FILENAME} | awk '{print $1}'` = "${FILE_SHA256}" ] && echo "File broken: ${LOCAL_FILENAME}"
 
 # 4. link
-python3 elbdm_rescale_periodic_IC.py -input ${LOCAL_FILENAME} -output Music_InitCondition_z99_L2.8_N0256_LightHalo -n_in 64 -n_out 256
-ln -sf Music_InitCondition_z99_L2.8_N0256_LightHalo UM_IC_wave_light
+python3 elbdm_rescale_periodic_IC.py -input ${LOCAL_FILENAME} -output Music_InitCondition_z100_L2.8_N0256_LightHalo -n_in 64 -n_out 256
+ln -sf Music_InitCondition_z100_L2.8_N0256_LightHalo UM_IC_wave_light
 python3 elbdm_wave_to_hybrid_IC.py -input UM_IC_wave_light -output UM_IC_hybrid_light -resolution 256
 ln -sf UM_IC_hybrid_light UM_IC

From 3c3766e8e4f3714be78aa48b3a15cbb6dd71afe4 Mon Sep 17 00:00:00 2001
From: ChunYen-Chen <chunyenchen2019@gmail.com>
Date: Fri, 24 Jan 2025 19:03:08 +0800
Subject: [PATCH 9/9] Remove zip file after decompress

---
 .../ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh   | 1 +
 1 file changed, 1 insertion(+)

diff --git a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
index 81dedce0d1..cc4b930d41 100644
--- a/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
+++ b/example/test_problem/ELBDM/LSS_Hybrid/download_spectral_interpolation_tables.sh
@@ -15,3 +15,4 @@ curl https://hub.yt/api/v1/item/${FILE_ID}/download -o "${LOCAL_FILENAME}"
 
 # 4. unzip
 unzip ${LOCAL_FILENAME}
+rm ${LOCAL_FILENAME}