Bump version to ena webin cli v9.0.1 + scaffold and chromosome level assembly support

[bedroesb]

FOR CONTRIBUTOR:

• I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• License permits unrestricted use (educational + commercial)
• This PR adds a new tool or tool collection
• This PR updates an existing tool or tool collection
• This PR does something else (explain below)

To Do:

• Add Form fields for agp and chromosome list files
• Add test files for agp and chromosome list files
• Write new test for chromosome level submissions

[bedroesb]

@bgruening Sorry to bother you with this one... But for some reason my tests are succeeding, yet combining the test results fail :/

[bedroesb]

@bgruening now i did fix the tests locally, but it is still failing :( and I can't figure out what the problem is. Also in de CI the tests succeed

[SaimMomin12]

@bedroesb Have restarted the CI for the failing step. Should turn green now.

[bedroesb]

Thank you so much! I will continue on the new features and communicate when it is ready for merging.

[bedroesb]

@bgruening and @SaimMomin12 The new features are implemented, and the tests in general are improved + newly added/new test data. The only problem: https://github.com/galaxyproject/tools-iuc/actions/runs/18205351104 my tests succeeded. I didn't change anything to the code besides taking away a datatype that was not allowed and now they all fail, every time due to another reason?

If this one is merged: #7212 can be closed

[bedroesb]

Locally they work fine ...

[bedroesb]

Ok they passed again 🎉 @SaimMomin12 I don't know if you could work your magic again?

[bedroesb]

That did the trick again. If there are any other blockers, let me know.

[bedroesb]

@bgruening Tools have passed!

[bedroesb]

Also passed locally with these latest changes 👍

[bgruening]

Thanks a lot!

[mvdbeek]

Attention: deployment skipped!

https://github.com/galaxyproject/tools-iuc/actions/runs/18243342556

[bedroesb]

@mvdbeek any idea why the tool tests succeed, but combining the test results error?

[bedroesb]

https://github.com/galaxyproject/tools-iuc/actions/runs/18243342556 indeed I notice that also the tool did not get pushed!

[bedroesb]

Again the same story, tests and linting succeed, but combining the test results break. Is there something I can do? :/

[bedroesb]

@bgruening would the fix be as simple as rerunning the failed step in the CI of main?

[bgruening]

Mh, it was not deployed? thats what you mean? I triggered a rerun, hope its not in the TS.

[bedroesb]

@bgruening thanks for the little push it needed! Now I can test it in real life!