minor changes

Author: ammaraziz

tools/squirrel/squirrel-phylo.xml

@@ -1,5 +1,5 @@
-<tool id="squirrel_phylo" name="squirrel phylo" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
-    <description>phylogenetic analysis of MPXV</description>
+<tool id="squirrel_phylo" name="Squirrel Phylo" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
+    <descriptionp>Phylogenetic and APOBEC3 analysis of MPXV (Mpox virus)</description>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -99,7 +99,7 @@
             format="csv"
             optional="true"
             label="Mask additional sites" 
-            help="Run squirrel in alignment with qc to generate the snp mask file." />
+            help="Run squirrel in alignment with QC to generate the SNP mask file." />
           <param name="bg_file" 
             type="data"
             format="fasta"

tools/squirrel/squirrel-qc.xml

@@ -1,5 +1,5 @@
-<tool id="squirrel_qc" name="squirrel qc" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
-    <description>QC analysis of MPXV sequences</description>
+<tool id="squirrel_qc" name="Squirrel QC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
+    <description>QC of MPXV (Mpox virus) sequences</description>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -16,7 +16,7 @@
       --seq-qc
       --clade $clade
 
-      --threads \${GALAXY_SLOTS:-Z}
+      --threads \${GALAXY_SLOTS:-1}
 
       input.fasta &&
 
@@ -28,7 +28,7 @@
         <param name="sequences"
           type="data"
           format="fasta"
-          label="Sequences in fasta format" />
+          label="Sequences in FASTA format" />
         <param name="clade"
           type="select"
           label="Select MPXV Clade">