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1 parent 90f31f4 commit 3ece6ceCopy full SHA for 3ece6ce
tools/irma/irma.xml
@@ -10,6 +10,7 @@
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<requirements>
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<requirement type="package" version="@TOOL_VERSION@">irma</requirement>
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<requirement type="package" version="3.12">python</requirement>
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+ <requirement type="package" version="3.4">grep</requirement>
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</requirements>
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<command detect_errors="exit_code"><![CDATA[
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## handle gz inputs
@@ -55,6 +56,7 @@ TMP=\$TMPDIR
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ASSEM_PROG="MINIMAP2"
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GRID_ON=0
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SKIP_E=$SKIP_E
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+SORT_PROG="BLAT"## for test purpose
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#if $module == "FLU-avian": ## using short read presets for minimap2
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SSW_E="1 -x sr"
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#end if
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