diff --git a/data_managers/data_manager_checkm2/data_manager/checkm2_datamanager.xml b/data_managers/data_manager_checkm2/data_manager/checkm2_datamanager.xml index 59a106bef78..73c654b2cb1 100644 --- a/data_managers/data_manager_checkm2/data_manager/checkm2_datamanager.xml +++ b/data_managers/data_manager_checkm2/data_manager/checkm2_datamanager.xml @@ -27,6 +27,7 @@ "checkm2":[ { "path":"uniref100.KO.1.dmnd", + "dbkey":"@TOOL_VERSION@", "name":"CheckM2 diamond DB downloaded with version @TOOL_VERSION@", "version":"@TOOL_VERSION@", "value":"@TOOL_VERSION@" diff --git a/data_managers/data_manager_checkm2/data_manager_conf.xml b/data_managers/data_manager_checkm2/data_manager_conf.xml index d38fd691d63..cfc9e7c5900 100644 --- a/data_managers/data_manager_checkm2/data_manager_conf.xml +++ b/data_managers/data_manager_checkm2/data_manager_conf.xml @@ -3,6 +3,7 @@ + diff --git a/data_managers/data_manager_checkm2/test-data/checkm2.loc b/data_managers/data_manager_checkm2/test-data/checkm2.loc index 5be674eedaa..f880d13ea70 100644 --- a/data_managers/data_manager_checkm2/test-data/checkm2.loc +++ b/data_managers/data_manager_checkm2/test-data/checkm2.loc @@ -1,2 +1,2 @@ -1.0.2 CheckM2 diamond DB downloaded with version 1.0.2 1.0.2 /tmp/tmpf_hplx2a/galaxy-dev/tool-data/checkm2/1.0.2/uniref100.KO.1.dmnd +1.0.2 1.0.2 CheckM2 diamond DB downloaded with version 1.0.2 1.0.2 /tmp/tmpf_hplx2a/galaxy-dev/tool-data/checkm2/1.0.2/uniref100.KO.1.dmnd diff --git a/data_managers/data_manager_checkm2/tool-data/checkm2.loc.sample b/data_managers/data_manager_checkm2/tool-data/checkm2.loc.sample index fb6c26e2c28..13d5ed90c39 100644 --- a/data_managers/data_manager_checkm2/tool-data/checkm2.loc.sample +++ b/data_managers/data_manager_checkm2/tool-data/checkm2.loc.sample @@ -10,9 +10,9 @@ #The checkm2_db_versioned.loc file has this format (longer white space #characters are TAB characters): # -# +# #The column indicates the checkm2 version that generated the database # -#diamond_db_1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd +#diamond_db_1.0.2 1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd diff --git a/data_managers/data_manager_checkm2/tool_data_table_conf.xml.sample b/data_managers/data_manager_checkm2/tool_data_table_conf.xml.sample index 91d3896326e..210f6d76a89 100644 --- a/data_managers/data_manager_checkm2/tool_data_table_conf.xml.sample +++ b/data_managers/data_manager_checkm2/tool_data_table_conf.xml.sample @@ -1,6 +1,6 @@ - value, name, version, path + value, dbkey, name, version, path
\ No newline at end of file diff --git a/data_managers/data_manager_checkm2/tool_data_table_conf.xml.test b/data_managers/data_manager_checkm2/tool_data_table_conf.xml.test index 0d4e82a19c8..20f67ee8133 100644 --- a/data_managers/data_manager_checkm2/tool_data_table_conf.xml.test +++ b/data_managers/data_manager_checkm2/tool_data_table_conf.xml.test @@ -1,7 +1,7 @@ - value, name, version, path + value, dbkey, name, version, path
\ No newline at end of file diff --git a/tools/checkm2/test-data/checkm2.loc b/tools/checkm2/test-data/checkm2.loc index cb171f790ec..fae8c7709ac 100644 --- a/tools/checkm2/test-data/checkm2.loc +++ b/tools/checkm2/test-data/checkm2.loc @@ -1,3 +1,3 @@ ##Checkm2 versioned indexes -#build_id display_name path version -001 test_db 1.0.2 ${__HERE__}/Checkm2_database/uniref100.KO.1.dmnd +#build_id dbkey display_name path version +001 1.0.2 test_db 1.0.2 ${__HERE__}/Checkm2_database/uniref100.KO.1.dmnd diff --git a/tools/checkm2/tool-data/checkm2.loc.sample b/tools/checkm2/tool-data/checkm2.loc.sample index fb6c26e2c28..9b50efa7c85 100644 --- a/tools/checkm2/tool-data/checkm2.loc.sample +++ b/tools/checkm2/tool-data/checkm2.loc.sample @@ -10,9 +10,9 @@ #The checkm2_db_versioned.loc file has this format (longer white space #characters are TAB characters): # -# +# #The column indicates the checkm2 version that generated the database # -#diamond_db_1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd +#diamond_db_1.0.2 1.0.2 Diamond database 1.0.2 /mnt/galaxyIndices/Checkm2_database/uniref100.KO.1.dmnd diff --git a/tools/checkm2/tool_data_table_conf.xml.sample b/tools/checkm2/tool_data_table_conf.xml.sample index 91d3896326e..210f6d76a89 100644 --- a/tools/checkm2/tool_data_table_conf.xml.sample +++ b/tools/checkm2/tool_data_table_conf.xml.sample @@ -1,6 +1,6 @@ - value, name, version, path + value, dbkey, name, version, path
\ No newline at end of file diff --git a/tools/checkm2/tool_data_table_conf.xml.test b/tools/checkm2/tool_data_table_conf.xml.test index 12a81b8a370..5f4eaface7f 100644 --- a/tools/checkm2/tool_data_table_conf.xml.test +++ b/tools/checkm2/tool_data_table_conf.xml.test @@ -1,6 +1,6 @@ - value, name, version, path + value, dbkey, name, version, path
\ No newline at end of file