diff --git a/workflows/amplicon/dada2/dada2_paired-tests.yml b/workflows/amplicon/dada2/dada2_paired-tests.yml index 50d9c177d2..2d94b8cb3b 100644 --- a/workflows/amplicon/dada2/dada2_paired-tests.yml +++ b/workflows/amplicon/dada2/dada2_paired-tests.yml @@ -84,3 +84,87 @@ n: 7 - has_n_lines: n: 171 +- doc: Same without specifying trunction length + job: + Paired input data: + class: Collection + collection_type: list:paired + elements: + - class: Collection + type: paired + identifier: F3D0 + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/800651/files/F3D0_R1.fastq + - class: File + identifier: reverse + location: https://zenodo.org/record/800651/files/F3D0_R2.fastq + - class: Collection + type: paired + identifier: F3D5 + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/800651/files/F3D5_R1.fastq + - class: File + identifier: reverse + location: https://zenodo.org/record/800651/files/F3D5_R2.fastq + - class: Collection + type: paired + identifier: F3D145 + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/800651/files/F3D145_R1.fastq + - class: File + identifier: reverse + location: https://zenodo.org/record/800651/files/F3D145_R2.fastq + - class: Collection + type: paired + identifier: F3D150 + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/800651/files/F3D150_R1.fastq + - class: File + identifier: reverse + location: https://zenodo.org/record/800651/files/F3D150_R2.fastq + - class: Collection + type: paired + identifier: Mock + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/800651/files/Mock_R1.fastq + - class: File + identifier: reverse + location: https://zenodo.org/record/800651/files/Mock_R2.fastq + Pool samples: 'FALSE' + Cached reference database: silva_132 + outputs: + Sequence Table: + path: test-data/Sequence Table.dada2_sequencetable + asserts: + - has_n_columns: + n: 6 + - has_n_lines: + n: 171 + Counts: + path: test-data/Counts.tabular + asserts: + - has_n_columns: + n: 8 + - has_n_lines: + n: 6 + Taxonomy: + ftype: tabular + sorted: true + asserts: + - has_text: + text: Firmicutes + n: 131 + - has_n_columns: + n: 7 + - has_n_lines: + n: 171 \ No newline at end of file