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Restructure microbiome folders #682

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paulzierep opened this issue Feb 13, 2025 · 0 comments

paulzierep commented Feb 13, 2025

At the moment we got Engys foodborne pathogens workflows in the https://github.com/galaxyproject/iwc/tree/main/workflows/microbiome folder, however, the readme is not generic for microbiome analysis.

We want to add MAGs workflows and also other microbiome workflows and are not so sure about structuring.

We also got https://github.com/galaxyproject/iwc/tree/main/workflows/amplicon and https://github.com/galaxyproject/iwc/tree/main/workflows/amplicon-mgnify which is actually also microbiome.

Maybe we could move all folders that are related to microbiome analysis in one folder and move https://github.com/galaxyproject/iwc/tree/main/workflows/microbiome to a pathogen-detection folder.

Any other ideas ?

Does the folder structure change anything downstream, like does it have an influence on the CI / workflowHub logic ? @mvdbeek ?

Ping @bernt-matthias @bebatut @EngyNasr @RZ9082

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