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Don't give read permission to the entire objects directory #481

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ksuderman
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@ksuderman ksuderman commented Jun 29, 2024

Versions of Galaxy prior to 24.1.1 (to be released) contain a bug that did not mount the extra_files directories to jobs causing some tools to fail. Once 24.1.1 is available we can merge this to restrict jobs so they can only read their inputs and only write to their output locations.

See PR #18462

Closes #480
Closes #478

@ksuderman ksuderman marked this pull request as ready for review July 5, 2024 13:59
@ksuderman ksuderman requested a review from nuwang July 5, 2024 14:35
@ksuderman ksuderman added the patch label Jul 5, 2024
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My simple test of running the variant calling workflow passes so I think this is safe to merge now.

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Great news! Thanks for testing.

@nuwang nuwang merged commit 7c65eca into galaxyproject:master Jul 5, 2024
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Remove objects read permission Cannot delete files/folders in the galaxy database owned by root users
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