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Stats on indices #187

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nekrut opened this issue Dec 5, 2024 · 1 comment

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nekrut commented Dec 5, 2024

Get storage foorprint of indices for bowtie, bw etc

nekrut added this to BRC development tasks

nekrut converted this from a draft issue

nekrut assigned nekrut and natefoo

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natefoo commented Dec 5, 2024

For human (GCF_000001405.40):

format	size
fasta (uncompressed)	3.1 GB
twobit	797 MB
bowtie1	3.0 GB
bowtie2	4.0 GB
bwa	5.2 GB
bwa-mem2	16.9 GB
hisat2	4.3 GB
samtoolx faidx	19 KB
STAR	24.9 GB

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