From c64de00012bd43cb5a934b475678171a70d547fe Mon Sep 17 00:00:00 2001 From: nsheff Date: Wed, 12 Jun 2024 08:02:04 -0400 Subject: [PATCH] Tone down recommendation per feedback --- docs/seqcol.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/docs/seqcol.md b/docs/seqcol.md index cbecfa9..6beb81a 100644 --- a/docs/seqcol.md +++ b/docs/seqcol.md @@ -458,11 +458,10 @@ Here, we specify standardized, useful non-inherent attributes that we recommend. #### 4.1 The `sorted_name_length_pairs` attribute (`RECOMMENDED`) The `sorted_name_length_pairs` attribute is a *non-inherent* attribute of a sequence collection with a formal definition, provided here. -It is `RECOMMENDED` that all seqcol implementations add this attribute to all sequence collections. When digested, this attribute provides a digest for an order-invariant coordinate system for a sequence collection. Because it is *non-inherent*, it does not affect the identity (digest) of the collection. It is created deterministically from the `names` and `lengths` attributes in the collection; it *does not* depend on the actual sequence content, so it is consistent across two collections with different sequence content if they have the same `names` and `lengths`, which are correctly collated, but with pairs not necessarily in the same order. -For rationale and use cases of `sorted_name_length_pairs`, see [*Footnote F7*](#f7-use-cases-for-the-sorted_name_length_pairs-non-inherent-attribute). +This attribute is `RECOMMENDED` to allow unified genome browser visualization of data defined on different reference sequence collections. For more rationale and use cases of `sorted_name_length_pairs`, see [*Footnote F7*](#f7-use-cases-for-the-sorted_name_length_pairs-non-inherent-attribute). Algorithm: