From 1321cfcfec7e4a9ff4c601038dcc43b2d6dc2a64 Mon Sep 17 00:00:00 2001 From: nsheff Date: Tue, 5 Mar 2024 11:32:52 -0500 Subject: [PATCH] update package name --- docs/digest_from_collection.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/digest_from_collection.md b/docs/digest_from_collection.md index 28c2ba7..5f0838d 100644 --- a/docs/digest_from_collection.md +++ b/docs/digest_from_collection.md @@ -12,19 +12,19 @@ One of the most common uses of the seqcol specification is to compute a standard If working from within Python, you can use the reference implementation like this: -1. Install the seqcol package with some variant of `pip install seqcol`. +1. Install the seqcol package with some variant of `pip install refget`. 2. Build up your canonical seqcol object 3. Compute its digest: ``` -import seqcol -seqcol.digest(seqcol_obj) +import refget +refget.seqcol_digest(seqcol_obj) ``` If you have a FASTA file, you could get a canonical seqcol object like this: ``` -seqcol_obj = seqcol.csc_from_fasta(fa_file) +seqcol_obj = refget.fasta_file_to_seqcol(fa_file) ``` ## 2. Implement the seqcol digest algorithm yourself