bibliography.bib

@book{wille,
  author    = {Wille, Klaus},
  date      = {2001},
  title     = {The Physics of Particle Accelerators: An Introduction},
  isbn      = {0198505493},
  publisher = {Clarendon Press}
}

@book{hinterberger,
  author    = {Hinterberger, Frank},
  title     = {Physik der Teilchenbeschleuniger und Ionenoptik},
  publisher = {Springer},
  date      = {2008},
  edition   = {2. Aufl.},
  isbn      = {978-3-540-75282-0},
  doi       = {10.1007/978-3-540-75282-0},
  url       = {https://doi.org/10.1007/978-3-540-75282-0},
  langid    = {ngerman}
}

@book{wiedemann,
  author    = {Wiedemann, Helmut},
  title     = {{Particle Accelerator Physics}},
  doi       = {10.1007/978-3-319-18317-6},
  url       = {https://doi.org/10.1007/978-3-319-18317-6},
  isbn      = {978-3-319-18316-9, 978-3-319-18317-6},
  publisher = {Springer},
  address   = {Berlin, Germany},
  series    = {Graduate Texts in Physics},
  year      = {2015}
}

@book{wolski,
  author    = {Wolski, Andrzej},
  title     = {Introduction to Beam Dynamics in High-Energy Electron Storage Rings},
  publisher = {Morgan & Claypool Publishers},
  year      = {2018},
  series    = {2053-2571},
  isbn      = {978-1-6817-4989-1},
  url       = {http://dx.doi.org/10.1088/978-1-6817-4989-1},
  doi       = {10.1088/978-1-6817-4989-1}
}

@book{vsrstudy,
  author    = {A. Jankowiak and P. Goslawski and P. Kuske and R. Müller and M. Ries and M. Ruprecht and A. Schälicke and G. Wüstefeld and W. Anders and A. Burrill and J. Knobloch and A. Neumann and A. Velez and V. Dürr and D. Pflückhahn and O. Schüler and A. Föhlisch and K. Holldack and K. Ott and N. Neumann},
  title     = {Technical Design Study BESSY VSR},
  year      = {2015},
  doi       = {10.5442/R0001},
  keywords  = {Physics, Engineering},
  publisher = {Helmholtz-Zentrum Berlin für Materialien und Energie}
}

@article{abobakr2003,
  title = {Brilliant, Coherent Far-Infrared (THz) Synchrotron Radiation},
  author = {Abo-Bakr, M. and Feikes, J. and Holldack, K. and Kuske, P. and Peatman, W. B. and Schade, U. and W\"ustefeld, G. and H\"ubers, H.-W.},
  journal = {Phys. Rev. Lett.},
  volume = {90},
  issue = {9},
  pages = {094801},
  numpages = {4},
  year = {2003},
  month = {Mar},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.90.094801},
  url = {https://link.aps.org/doi/10.1103/PhysRevLett.90.094801}
}


@article{courantsnyder,
  author       = {Courant, E. D. and Snyder, H. S.},
  date         = {1954},
  journaltitle = {Annals of Physics},
  pages        = {1--49},
  title        = {Theory of the Alternating-Gradient Synchrotron},
  doi          = {10.1016/0003-4916(58)90012-5},
  url          = {http://ab-abp-rlc.web.cern.ch/ab-abp-rlc/AP-literature/Courant-Snyder-1958.pdf}
}

@book{Nolting2018,
  author    = {Nolting, Wolfgang},
  year      = {2018},
  title     = {Theoretical Physics 8 - Statistical Physics},
  isbn      = {978-3-319-73827-7},
  publisher = {Springer},
  address   = {Berlin, Heidelberg}
}

@book{magnus_winkler,
  title  = {Hill's equation},
  author = {Wilhelm Magnus and Stanley Winkler},
  year   = {1966}
}

@book{murphy_1996,
  title       = {Synchrotron light source data book: Version 4, Revision 05/96},
  doi         = {10.2172/383670},
  author      = {Murphy, J. B.},
  year        = {1996},
  institution = {Brookhaven National Lab.}
}

@thesis{ruprecht-phd,
  type   = {PhD thesis},
  author = {Ruprecht, Martin},
  title  = {Calculation of coupled bunch effects in the synchrotron light source BESSY VSR},
  doi    = {10.18452/17446},
  school = {Humboldt-Universität zu Berlin},
  year   = {2016}
}

@thesis{andreas_ba,
  type   = {Bachelor's thesis},
  author = {Andreas, Felix},
  title  = {Optimization of the BESSY II Optics for the VSR project: Increase the Installation Length for the VSR Cryomodule in the T2 Section of the BESSY II Storage Ring},
  school = {Humboldt-Universität zu Berlin},
  year   = {2017}
}

@misc{jankowiak,
  author   = {Jankowiak, Andreas},
  location = {Humboldt-Universität zu Berlin, Helmholtz-Zentrum Berlin (HZB)},
  date     = {2017},
  title    = {Lecture: Physics and Technology of Modern Particle Accelerators}
}

@inproceedings{locosafranek,
  author       = {Safranek, James},
  title        = {Linear Optics from Closed Orbits (LOCO): An introduction},
  reportnumber = {SLAC-REPRINT-2009-545},
  journal      = {ICFA Beam Dyn. Newslett.},
  volume       = {44},
  pages        = {43--49},
  year         = {2007}
}

@inproceedings{aml,
  author    = {D. Sagan and M. Forster and D. A. Bates and A. Wolski and F. Schmidt and N.J. Walker and T. Larrieu and Y. Roblin and T. Pelaia and P. Tenenbaum and M. Woodley and S. Reiche},
  title     = {The Accelerator Markup Language and the Universal Accelerator Parser},
  booktitle = {Proc. 10th European Particle Accelerator Conf. (EPAC'06)},
  paper     = {WEPCH150},
  venue     = {Edinburgh, UK},
  publisher = {JACoW Publishing},
  month     = {Jun.},
  year      = {2006}
}

@inproceedings{uap,
  author    = {D. Sagan and D. A. Bates and A. Wolski},
  title     = {The Universal Accelerator Parser},
  booktitle = {Proc. 9th Int. Computational Accelerator Physics Conf. (ICAP'06)},
  pages     = {303--307},
  paper     = {THM2IS02},
  venue     = {Chamonix, Switzerland},
  publisher = {JACoW Publishing},
  month     = {Oct.},
  year      = {2006}
}

@inproceedings{pymad,
  author    = {K. Fuchsberger and Y. I. Levinsen},
  title     = {PYMAD – Integration of MADX in {Python}},
  booktitle = {Proc. 2nd Int. Particle Accelerator Conf. (IPAC'11)},
  pages     = {2289--2291},
  paper     = {WEPC119},
  venue     = {San Sebastian, Spain},
  publisher = {JACoW Publishing},
  month     = {Sep.},
  year      = {2011}
}

@inproceedings{mmlpaper,
  author    = {G. J. Portmann and W. J. Corbett and A. Terebilo},
  title     = {An Accelerator Control Middle Layer Using Matlab},
  booktitle = {Proc. 21st Particle Accelerator Conf. (PAC'05)},
  pages     = {4009--4011},
  paper     = {FPAT077},
  venue     = {Knoxville, TN, USA},
  publisher = {JACoW Publishing},
  month     = {May},
  year      = {2005}
}

@inproceedings{mmlbasedloco,
  author    = {J. Safranek and G. Portmann and A. Terebilo},
  title     = {MATLAB-BASED LOCO},
  booktitle = {Proc. 8th European Particle Accelerator Conf. (EPAC'02)},
  pages     = {1184--1186},
  paper     = {WEPLE003},
  venue     = {Paris, France},
  publisher = {JACoW Publishing},
  month     = {Jun.},
  year      = {2002}
}

@inproceedings{latticedesignbessy2,
  author    = {Jaeschke, E. and Kraemer, D. and Kuske, B. and Kuske, P. and Scheer, M. and Weihreter, E. and Wuestefeld, G.},
  editor    = {Corneliussen, Steven T. and Carlton, Linda},
  title     = {Lattice design for the 1.7-GeV Light Source BESSY II},
  booktitle = {Proc. 15th Particle Accelerator Conf. (PAC'93)},
  pages     = {1474--1477},
  venue     = {Washington D.C., USA},
  publisher = {JACoW Publishing},
  month     = {Mar.},
  year      = {1993}
}

@InProceedings{kuskekramer2016,
    author = {P. Kuske and F. Kramer},
    title = {Transverse Emittance Exchange for Improved Injection Efficiency},
    booktitle = {Proc. 7th Int. Particle Accelerator Conf. (IPAC'16)},
    pages = {2028--2031},
    paper = {WEOAA01},
    venue = {Busan, Korea},
    publisher = {JACoW Publishing},
    month = {May},
    year = {2016},
    doi = {doi:10.18429/JACoW-IPAC2016-WEOAA01},
    note = {https://doi.org/10.18429/JACoW-IPAC2016-WEOAA01},
    language = {english}
}


@inproceedings{kuskeli,
  author       = {Kuske, Peter and Li, Ji},
  title        = {Performance Improvements of the BESSY II Storage Ring by Optimizing the Phase Acceptance},
  journaltitle = {Proceedings of IPAC2017},
  doi          = {10.18429/JACoW-IPAC2017-WEPAB006},
  month        = {5},
  year         = {2017}
}

@inproceedings{femto1,
  author    = {Bäcker, HJ and Bahrdt, J and Dürr, HA and Dürr, V and Eberhardt, W and Gaupp, A and Godehusen, K and Holldack, K and Jaeschke, E and Kachel, T},
  location  = {Helmholtz-Zentrum Berlin für Materialien und Energie GmbH},
  title     = {Status of the BESSY II Femtosecond X-ray Source},
  booktitle = {Proc. 9th European Particle Accelerator Conf. (EPAC'04)},
  paper     = {THPKF014},
  venue     = {Lucerne, Switzerland},
  publisher = {JACoW Publishing},
  month     = {Jul.},
  year      = {2004},
  url       = {http://accelconf.web.cern.ch/e04/papers/THPKF014.pdf}
}

@inproceedings{femto2,
  author       = {Holldack, K. and Kachel, T. and Khan, S. and Mitzner, R. and Quast, T.},
  title        = {Characterization of laser-electron interaction at the BESSY II femtoslicing source},
  doi          = {10.1103/PhysRevSTAB.8.040704},
  journaltitle = {Physical review special topics - Accelerators and beams},
  volume       = {8},
  pages        = {040704},
  year         = {2005}
}

@inproceedings{emil1,
  author    = {Bahrdt, J. and Kuske, P. and Schmid, P. O. and Birke, T. and Follath, R. and Simmering, D. and Wuestefeld, G.},
  title     = {Modifications to the Machine Optics of BESSY II Necessitated by the EMIL Project},
  location  = {Helmholtz-Zentrum Berlin für Materialien und Energie GmbH},
  booktitle = {Proc. 3rd Int. Particle Accelerator Conf. (IPAC'12)},
  pages     = {1614--1616},
  paper     = {TUPPP007},
  venue     = {New Orleans, LA, USA},
  publisher = {JACoW Publishing},
  month     = {May},
  year      = {2012}
}

@inproceedings{linac,
  author    = {T. Atkinson and V. Dürr and M. Helmecke and D. Schüler and E. Weihreter and D. Jousse and J-L. Pastre and A. Setty},
  title     = {Commissioning of the 50 MeV Preinjector Linac for the BESSY II Facility},
  booktitle = {Proc. 2nd Int. Particle Accelerator Conf. (IPAC'11)},
  pages     = {3140--3142},
  paper     = {THPC108},
  venue     = {San Sebastian, Spain},
  publisher = {JACoW Publishing},
  month     = {Sep.},
  year      = {2011}
}

@inproceedings{Chasman1975,
  doi       = {10.1109/tns.1975.4327987},
  url       = {https://doi.org/10.1109/tns.1975.4327987},
  year      = {1975},
  publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
  volume    = {22},
  number    = {3},
  pages     = {1765--1767},
  author    = {R. Chasman and G. K. Green and E. M. Rowe},
  title     = {Preliminary Design of a Dedicated Synchrotron Radiation Facility},
  journal   = {{IEEE} Transactions on Nuclear Science}
}

@inproceedings{helm1973,
  author       = {Helm, Richard H. and Lee, Martin J. and Morton, P. L. and Sands, M.},
  editor       = {Lofgren, E. J.},
  title        = {Evaluation of synchrotron radiation integrals},
  reportnumber = {SLAC-PUB-1193},
  doi          = {10.1109/TNS.1973.4327284},
  journal      = {IEEE Transactions on Nuclear Science},
  volume       = {20},
  pages        = {900--901},
  year         = {1973}
}

@InProceedings{farvacque,
    author = {L. Farvacque and J. L. Laclare and P. Nghiem and J. Peyet and H. Tanaka and A. Tkatchenko},
    title = {Possible Retuning of the ESRF Storage Ring Lattice for Reducing the Beam Emittance},
    booktitle = {Proc. 4th European Particle Accelerator Conf. (EPAC'94)},
    pages = {612--615},
    paper = {},
    venue = {London, UK},
    publisher = {JACoW Publishing},
    month = {Jun.-Jul.},
    year = {1994},
    language = {english}
}

@article{sands1970,
  author       = {Sands, Matthew},
  title        = {The Physics of Electron Storage Rings: An Introduction},
  doi          = {10.2172/4064201},
  url          = {https://www.slac.stanford.edu/pubs/slacreports/reports02/slac-r-121.pdf},
  year         = {1970},
  reportnumber = {SLAC-121}
}

@software{elegant,
  author   = {Borland, Michael},
  location = {Argonne National Laboratory},
  date     = {2021-09-21},
  title    = {Elegant: A flexible SDDS-compliant code for accelerator simulation},
  version  = {2021.3.0}
}

@software{sdds-toolkit,
  author   = {Borland, Michael},
  location = {Argonne National Laboratory},
  title    = {SDDS and SDDS-Compliant Programs: A Modular System for Accelerator Design, Simulation, Control, and Analysis},
  url      = {https://ops.aps.anl.gov/SDDSInfo.shtml},
  datae    = {2020-10-12},
  version  = {5.0}
}

@software{madx,
  author   = {Grote, Hans and Schmidt, Frank and Deniau, Laurent and others},
  location = {CERN},
  date     = {2021-05-03},
  title    = {Methodical Accelerator Design},
  version  = {5.07.00}
}

@software{cpymad,
  author    = {Thomas Gläßle and Riccardo De Maria and Yngve Levinsen and Kajetan Fuchsberger},
  url       = {https://github.com/hibtc/cpymad},
  title     = {cpymad: Cython binding to {MAD-X}},
  location  = {Heidelberg Ion-Beam Therapy Center (HIT)},
  month     = sep,
  year      = 2021,
  publisher = {Zenodo},
  version   = {v1.9.0},
  doi       = {10.5281/zenodo.5364513}
}

@software{lattice-json,
  author  = {Andreas, Felix},
  title   = {LatticeJSON: A JSON based lattice file format},
  url     = {https://github.com/nobeam/latticejson},
  urldate = {2021-09-26}
}

@article{json-schema,
  title   = {JSON Schema},
  url     = {https://json-schema.org/},
  urldate = {2021-09-26}
}

@software{lark-parser,
  author   = {Shinan, Erez and others},
  date     = {2021-08-31},
  location = {https://github.com/lark-parser/lark},
  title    = {Lark: A Modern Parsing Library for {Python}},
  version  = {0.12.0}
}

@www{accelerator-physics-codes,
  author  = {Wikipedia},
  title   = {Accelerator Physics Codes},
  url     = {https://en.wikipedia.org/wiki/Accelerator_physics_codes},
  urldate = {2021-09-26}
}

@www{lattice-file-issues,
  author  = {Wikipedia},
  title   = {Lattice file format and data interchange issues},
  url     = {https://en.wikipedia.org/wiki/Accelerator_physics_codes#Lattice_file_format_and_data_interchange_issues},
  urldate = {2021-09-26}
}

@article{json,
  author  = {Douglas Crockford},
  title   = {JSON (JavaScript Object Notation)},
  url     = {https://www.json.org},
  urldate = {2021-09-26}
}

@article{matplotlib,
  author  = {Hunter, John D.},
  journal = {Computing in Science \& Engineering},
  title   = {Matplotlib: A 2D Graphics Environment},
  year    = {2007},
  volume  = {9},
  number  = {3},
  pages   = {90-95},
  doi     = {10.1109/MCSE.2007.55}
}

@article{numpy,
  title     = {Array programming with {NumPy}},
  author    = {Charles R. Harris and K. Jarrod Millman and St{\'{e}}fan J.
               van der Walt and Ralf Gommers and Pauli Virtanen and David
               Cournapeau and Eric Wieser and Julian Taylor and Sebastian
               Berg and Nathaniel J. Smith and Robert Kern and Matti Picus
               and Stephan Hoyer and Marten H. van Kerkwijk and Matthew
               Brett and Allan Haldane and Jaime Fern{\'{a}}ndez del
               R{\'{i}}o and Mark Wiebe and Pearu Peterson and Pierre
               G{\'{e}}rard-Marchant and Kevin Sheppard and Tyler Reddy and
               Warren Weckesser and Hameer Abbasi and Christoph Gohlke and
               Travis E. Oliphant},
  year      = {2020},
  month     = sep,
  journal   = {Nature},
  volume    = {585},
  number    = {7825},
  pages     = {357--362},
  doi       = {10.1038/s41586-020-2649-2},
  publisher = {Springer Science and Business Media {LLC}},
  url       = {https://doi.org/10.1038/s41586-020-2649-2}
}

@software{vuejs,
  author  = {You, Evan and others},
  url     = {https://vuejs.org/},
  date    = {2021-09-14},
  title   = {Vue.js: The Progressive JavaScript Framework},
  version = {3.2.1}
}

@software{vitejs,
  author  = {You, Evan and others},
  url     = {https://vitejs.dev/},
  date    = {2021-09-14},
  title   = {Vite: Next Generation Frontend Tooling},
  version = {2.5.7}
}

@software{cpython,
  author    = {van Rossum, Guido and others},
  title     = {CPython},
  url       = {https://github.com/python/cpython},
  publisher = {GitHub},
  journal   = {GitHub repository}
}

@software{faster-cpython,
  author    = {van Rossum, Guido and others},
  title     = {Faster CPython},
  url       = {https://github.com/faster-cpython},
  publisher = {GitHub},
  journal   = {GitHub repository}
}

@software{cinder,
  author    = {Facebook},
  title     = {Cinder: Instagram's performance oriented fork of CPython},
  url       = {https://github.com/facebookincubator/cinder},
  publisher = {GitHub},
  journal   = {GitHub repository}
}

@software{mypyc,
  author    = {Lehtosalo, Jukka and Sullivan, Michael J. and others},
  title     = {mypyc: Compile type annotated {Python} to fast {C} extensions},
  url       = {https://github.com/mypyc/mypyc},
  publisher = {GitHub},
  journal   = {GitHub repository}
}

@software{pypy,
  author = {Rigo, Armin and others},
  url    = {https://www.pypy.org/},
  title  = {PyPy: A fast, compliant alternative implementation of {Python}}
}

@software{cffi,
  author = {Rigo, Armin and others},
  url    = {https://cffi.readthedocs.io/en/latest},
  title  = {CFFI: C Foreign Function Interface for {Python}}
}

@software{nuitka,
  author    = {Hayen, Kay and others},
  title     = {Nuitka: A {Python} compiler written in {Python}},
  url       = {https://github.com/Nuitka/Nuitka},
  publisher = {GitHub},
  journal   = {GitHub repository}
}

@inproceedings{numba,
  title     = {Numba: A LLVM-based {Python} JIT compiler},
  author    = {Lam, Siu Kwan and Pitrou, Antoine and Seibert, Stanley},
  booktitle = {Proceedings of the Second Workshop on the LLVM Compiler Infrastructure in HPC},
  pages     = {1--6},
  year      = {2015}
}

@article{pythran,
  title     = {Pythran: Enabling static optimization of scientific {Python} programs},
  author    = {Guelton, Serge and Brunet, Pierrick and Amini, Mehdi and Merlini, Adrien and Corbillon, Xavier and Raynaud, Alan},
  journal   = {Computational Science \& Discovery},
  volume    = {8},
  number    = {1},
  pages     = {014001},
  year      = {2015},
  publisher = {IOP Publishing}
}

@book{openmp,
  title     = {Parallel Programming in OpenMP},
  author    = {Chandra, Rohit and Dagum, Leo and Kohr, David and Menon, Ramesh and Maydan, Dror and McDonald, Jeff},
  year      = {2001},
  publisher = {Morgan kaufmann}
}