Hi @federicomarini is there a possibility of filtering the input matrix and running it only on a subset of genes? Looks like our starting matrix has 60325 genes that I filter further removing genes with zero expression across all samples in the dataframe, resulting in 53614 genes. The function takes a long time in running because we have multiple matrices (split by histology type) with sample sizes from 1 to ~650 samples. Any suggestions would be much appreciated. Thank you!
Hi @federicomarini is there a possibility of filtering the input matrix and running it only on a subset of genes? Looks like our starting matrix has 60325 genes that I filter further removing genes with zero expression across all samples in the dataframe, resulting in 53614 genes. The function takes a long time in running because we have multiple matrices (split by histology type) with sample sizes from 1 to ~650 samples. Any suggestions would be much appreciated. Thank you!