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[Feature] Outbreak.info COVID-19 Variants API Accessor #64

Description

@fccoelho

Summary

Implement accessor for Outbreak.info API - SARS-CoV-2 variants and genomic surveillance data.

Data Source

  • Name: Outbreak.info
  • URL: https://outbreak.info/
  • Type: Genomic Surveillance / COVID-19 Variants
  • Coverage: Global

Access

  • Open Access: ✅ YES
  • API Key Required: ❌ NO (for basic access)
  • Rate Limits: Reasonable limits for open access
  • Documentation: https://api.outbreak.info/

Data Available

  • SARS-CoV-2 lineage prevalence
  • Variant tracking
  • Mutation data
  • Location-based reports
  • Wastewater surveillance data
  • Research literature metadata

Value for Epidemiology

  • Variant surveillance: Track COVID-19 variants circulation
  • Genomic epidemiology: Lineage distribution over time
  • Pandemic response: Early warning for new variants
  • Research integration: Access to related publications

Implementation Notes

  • Built using BioThings SDK
  • JSON API format
  • Developed by Su/Wu Labs at Scripps Research
  • Integrates GISAID data (aggregated)

Priority

Medium - Important for COVID-19 surveillance and variant tracking

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