build(deps): Bump loads of stuff using Bazel Steward (with manual fixes, see #254)

Author: vorburger

MODULE.bazel

@@ -14,7 +14,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-RDF4J_VERSION = "5.1.1"
+RDF4J_VERSION = "5.1.2"
 
 GRPC_JAVA_VERSION = "1.69.0"
 
@@ -69,8 +69,8 @@ enola_maven.install(
         # dependencies are required.  This was inspired by the grpc-java examples at
         # https://github.com/grpc/grpc-java/blob/8c261c3f28c7d83e1e976acfc34b62027078252b/examples/MODULE.bazel#L24
         # which should be updated when this will be refined.
-        "com.google.api.grpc:grpc-google-cloud-pubsub-v1:0.1.24",
-        "com.google.api.grpc:proto-google-cloud-pubsub-v1:0.1.24",
+        "com.google.api.grpc:grpc-google-cloud-pubsub-v1:0.13.0",
+        "com.google.api.grpc:proto-google-cloud-pubsub-v1:0.13.0",
         "com.google.auto.value:auto-value:1.11.0",
         "com.google.auto.service:auto-service:1.1.1",
         "com.google.auto.service:auto-service-annotations:1.1.1",
@@ -79,8 +79,8 @@ enola_maven.install(
         "com.google.truth.extensions:truth-java8-extension:1.4.4",
         "com.google.truth.extensions:truth-proto-extension:1.4.4",
         # Protobuf
-        "com.google.protobuf:protobuf-java:4.29.2",
-        "com.google.protobuf:protobuf-java-util:4.29.2",
+        "com.google.protobuf:protobuf-java:4.29.3",
+        "com.google.protobuf:protobuf-java-util:4.29.3",
         # gRPC
         "io.grpc:grpc-netty:%s" % GRPC_JAVA_VERSION,
         "io.grpc:grpc-stub:%s" % GRPC_JAVA_VERSION,
@@ -91,19 +91,19 @@ enola_maven.install(
         "org.eclipse.rdf4j:rdf4j-rio-jsonld:%s" % RDF4J_VERSION,
         "org.eclipse.rdf4j:rdf4j-rio-turtle:%s" % RDF4J_VERSION,
         # TODO Remove jackson-databind when https://github.com/eclipse-rdf4j/rdf4j/issues/4907 Link Bug is fixed!
-        "com.fasterxml.jackson.core:jackson-databind:2.13.5",
+        "com.fasterxml.jackson.core:jackson-databind:2.18.3",
         # kubernetes:client-java also depends on Protobuf (+gRPC?), version may need to be upgraded together
-        "io.kubernetes:client-java:19.0.0",
+        "io.kubernetes:client-java:19.0.2",
         # Other
-        "ch.vorburger.exec:exec:3.1.5",
+        "ch.vorburger.exec:exec:3.3.0",
         "com.github.java-json-tools:uri-template:0.10",
-        "info.picocli:picocli:4.7.5",
-        "org.snakeyaml:snakeyaml-engine:2.8",
-        "org.yaml:snakeyaml:2.3",
-        "org.slf4j:slf4j-jdk14:2.0.16",
-        "org.slf4j:slf4j-simple:2.0.16",
+        "info.picocli:picocli:4.7.6",
+        "org.snakeyaml:snakeyaml-engine:2.9",
+        "org.yaml:snakeyaml:2.4",
+        "org.slf4j:slf4j-jdk14:2.0.17",
+        "org.slf4j:slf4j-simple:2.0.17",
         # Tika (unfortunately!) uses Log4j (v2) instead of SLF4j, so:
-        "org.apache.logging.log4j:log4j-to-jul:2.24.0",
+        "org.apache.logging.log4j:log4j-to-jul:2.24.3",
         "io.github.classgraph:classgraph:4.8.179",
         "com.google.errorprone:error_prone_annotations:2.36.0",
         "com.google.errorprone:error_prone_type_annotations:2.36.0",
@@ -112,19 +112,19 @@ enola_maven.install(
         "com.squareup.okhttp3:logging-interceptor:4.12.0",
         "dev.dirs:directories:26",
         "io.github.amithkoujalgi:ollama4j:1.0.70",
-        "com.github.spotbugs:spotbugs-annotations:4.8.6",
-        "io.github.java-diff-utils:java-diff-utils:4.12",
-        "org.jsoup:jsoup:1.18.1",
+        "com.github.spotbugs:spotbugs-annotations:4.9.1",
+        "io.github.java-diff-utils:java-diff-utils:4.15",
+        "org.jsoup:jsoup:1.18.3",
         "org.apache.tika:tika-core:3.0.0-BETA2",
         "org.apache.tika:tika-parsers-standard-package:3.0.0-BETA2",
         "com.github.package-url:packageurl-java:1.5.0",
 
         # Maven Connector
-        "eu.maveniverse.maven.mima.runtime:standalone-static:2.4.21",
-        "eu.maveniverse.maven.mima:context:2.4.21",
-        "eu.maveniverse.maven.mima.extensions:mmr:2.4.21",
-        "org.apache.maven.resolver:maven-resolver-api:1.9.22",
-        "org.apache.maven.resolver:maven-resolver-util:1.9.22",
+        "eu.maveniverse.maven.mima.runtime:standalone-static:2.4.22",
+        "eu.maveniverse.maven.mima:context:2.4.22",
+        "eu.maveniverse.maven.mima.extensions:mmr:2.4.22",
+        "org.apache.maven.resolver:maven-resolver-api:2.0.6",
+        "org.apache.maven.resolver:maven-resolver-util:2.0.6",
         "org.apache.maven:maven-model:3.9.9",
         "org.codehaus.plexus:plexus-xml:4.0.4",