update sampling and sequence data sources (#2) #39

	name: deploy-book

	# Run this when the main branch changes
	on:
	workflow_dispatch:
	push:
	branches:
	- main
	env:
	# `BASE_URL` determines the website is served from, including CSS & JS assets
	BASE_URL: /${{ github.event.repository.name }}

	# This job installs dependencies, builds the book, and pushes it to `gh-pages`
	jobs:
	deploy-book:
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	runs-on: ubuntu-latest
	permissions:
	pages: write
	id-token: write
	contents: read
	steps:
	- uses: actions/checkout@v4

	# Install dependencies
	- name: Set up Python 3.11
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	cache: pip

	- name: Install dependencies
	run: \|
	pip install -r requirements.txt

	- name: Setup Pages
	uses: actions/configure-pages@v4

	- uses: actions/setup-node@v4
	with:
	node-version: 18.x

	- name: Install MyST Markdown
	run: npm install -g mystmd

	- name: Build HTML Assets
	run: \|
	cd book
	myst build --html

	# Upload the book's HTML as an artifact
	- name: Upload artifact
	uses: actions/upload-pages-artifact@v3
	with:
	path: "./book/_build/html"

	# Deploy the book's HTML to GitHub Pages
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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