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main.go
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package main
// "If you want a fast and correct validator, pick santhosh-tekuri/jsonschema."
// - https://dev.to/vearutop/benchmarking-correctness-and-performance-of-go-json-schema-validators-3247
import (
"encoding/json"
"errors"
"fmt"
"os"
"path/filepath"
"strconv"
"strings"
"time"
"github.com/sourcegraph/conc/pool"
"github.com/santhosh-tekuri/jsonschema/v5"
"github.com/tidwall/gjson"
)
// todo:
// https://json-schema.org/understanding-json-schema/reference/regular_expressions.html
// https://github.com/santhosh-tekuri/jsonschema/issues/113
func panic_on_err(err error, action string) {
if err != nil {
panic(fmt.Sprintf("failed with '%s' while '%s'", err.Error(), action))
}
}
type Foo struct {
Label string
Path string
Schema *jsonschema.Schema
}
var SCHEMA_MAP map[string]Foo
func configure_validator() map[string]Foo {
loader := jsonschema.Loaders["file"]
c := jsonschema.NewCompiler()
c.Draft = jsonschema.Draft4
schema_file_list := map[string]string{
"POA": "api-raml/dist/model/article-poa.v3.json",
"VOR": "api-raml/dist/model/article-vor.v7.json",
}
schema_map := map[string]Foo{}
for label, path := range schema_file_list {
rdr, err := loader(path)
panic_on_err(err, fmt.Sprintf("loading '%s' schema file: ", label, path))
err = c.AddResource(label, rdr)
panic_on_err(err, "adding schema to compiler: "+label)
schema, err := c.Compile(label)
panic_on_err(err, "compiling schema: "+label)
schema_map[label] = Foo{
Label: label,
Path: path,
Schema: schema,
}
}
return schema_map
}
func init() {
SCHEMA_MAP = configure_validator()
}
// ---
func read_article_data(article_json_path string) (string, interface{}) {
article_json_bytes, err := os.ReadFile(article_json_path)
panic_on_err(err, "reading bytes from path: "+article_json_path)
result := gjson.GetBytes(article_json_bytes, "article.status")
if !result.Exists() {
panic("'article.status' field in article data not found: " + article_json_path)
}
schema_key := strings.ToUpper(result.String()) // "poa" => "POA"
// article-json contains 'journal', 'snippet' and 'article' sections.
// extract just the 'article' from the article data.
result = gjson.GetBytes(article_json_bytes, "article")
if !result.Exists() {
panic("'article' field in article data not found: " + article_json_path)
}
// what is happening here?? the slice of matching bytes are extracted from
// the article-json, skipping a conversion of `result` to a string then back
// to bytes for unmarshalling. if only a `result.Bytes()` existed :(
// - https://github.com/tidwall/gjson#user-content-working-with-bytes
var raw []byte
if result.Index > 0 {
raw = article_json_bytes[result.Index : result.Index+len(result.Raw)]
} else {
raw = []byte(result.Raw)
}
// convert the article-json data into a simple go datatype
var article interface{}
err = json.Unmarshal(raw, &article)
panic_on_err(err, "unmarshalling article section bytes")
return schema_key, article
}
func validate(schema Foo, article interface{}) (error, time.Duration) {
start := time.Now()
err := schema.Schema.Validate(article)
end := time.Now()
elapsed := end.Sub(start)
return err, elapsed
}
func path_exists(path string) bool {
_, err := os.Stat(path)
return !errors.Is(err, os.ErrNotExist)
}
func path_is_dir(path string) bool {
fi, err := os.Lstat(path)
panic_on_err(err, "reading path: "+path)
return fi.Mode().IsDir()
}
type Result struct {
Type string
FileName string
Elapsed int64
Success bool
// these can get large. I recommend not accumulating them for large jobs with many problems.
Error error
}
func validate_article(article_json_path string, capture_error bool) Result {
// read article data and determine schema to use
schema_key, article := read_article_data(article_json_path)
schema, present := SCHEMA_MAP[schema_key]
if !present {
panic("schema not found: " + schema_key)
}
// validate!
err, elapsed := validate(schema, article)
r := Result{
Type: schema_key, // POA or VOR
FileName: filepath.Base(article_json_path),
Elapsed: elapsed.Milliseconds(),
Success: err == nil,
}
if capture_error && err != nil {
r.Error = err
}
return r
}
func (r Result) String() string {
// "VOR valid in 2.6ms: elife-09560-v1.xml.json"
// "POA invalid in 123.4ms: elife-09560-v1.xml.json"
msg := "%s %s in %4dms: %s"
if r.Success {
return fmt.Sprintf(msg, r.Type, "valid", r.Elapsed, r.FileName)
}
return fmt.Sprintf(msg, r.Type, "invalid", r.Elapsed, r.FileName)
}
func format_ms(ms int64) string {
elapsed_str := fmt.Sprintf("%dms", ms)
if ms > 1000 {
// seconds
elapsed_str = fmt.Sprintf("%ds", ms/1000)
} else if ms > 60000 {
// minutes
elapsed_str = fmt.Sprintf("%dm", (ms/1000)/60)
}
return elapsed_str
}
func short_validation_error(err error) {
fmt.Printf("%v\n", err)
}
func long_validation_error(err error) {
fmt.Printf("%#v\n", err)
}
func main() {
args := os.Args[1:]
// required first argument is path to an xml document or a directory of xml.
input_path := args[0]
if !path_exists(input_path) {
panic("input path does not exist")
}
if path_is_dir(input_path) {
// validate many
path_list, err := os.ReadDir(input_path)
panic_on_err(err, "reading contents of directory: "+input_path)
sample_size := 1000
if len(args) == 2 {
// optional second argument is sample size
sample_size, err = strconv.Atoi(args[1])
panic_on_err(err, "converting sample size to an integer")
}
if sample_size == -1 || sample_size > len(path_list) {
// validate all files in dir
sample_size = len(path_list)
}
// filter directories from path listing
file_list := []string{}
for _, path := range path_list[:sample_size] {
if !path.IsDir() {
file_list = append(file_list, input_path+path.Name())
}
}
capture_errors := false
num_workers := 10 // todo: set to num cpus
p := pool.NewWithResults[Result]().WithMaxGoroutines(num_workers)
start_time := time.Now()
for _, file := range file_list {
file := file
p.Go(func() Result {
result := validate_article(file, capture_errors)
println(result.String())
return result
})
}
result_list := p.Wait()
end_time := time.Now()
wall_time_ms := end_time.Sub(start_time).Milliseconds()
var cpu_time_ms int64
for _, result := range result_list {
cpu_time_ms = cpu_time_ms + result.Elapsed
}
failures := []Result{}
for _, result := range result_list {
if !result.Success {
failures = append(failures, result)
}
}
println("")
println(fmt.Sprintf("articles:%d, failures:%d, workers:%d, wall-time:%s, cpu-time:%s, average:%dms", sample_size, len(failures), num_workers, format_ms(wall_time_ms), format_ms(cpu_time_ms), (cpu_time_ms / int64(sample_size))))
if len(failures) > 0 {
println("")
for _, result := range failures {
println(result.String())
if capture_errors {
short_validation_error(result.Error)
println("---")
}
}
os.Exit(1)
}
} else {
// assume file or a link pointing to a file, validate single
capture_errors := true
result := validate_article(input_path, capture_errors)
if !result.Success {
long_validation_error(result.Error)
os.Exit(1)
}
}
}