-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathmain.go
320 lines (269 loc) · 8.8 KB
/
main.go
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
package main
// "If you want a fast and correct validator, pick santhosh-tekuri/jsonschema."
// - https://dev.to/vearutop/benchmarking-correctness-and-performance-of-go-json-schema-validators-3247
import (
"bytes"
"encoding/json"
"errors"
"fmt"
"os"
"path"
"path/filepath"
"runtime"
"slices"
"sort"
"strconv"
"strings"
"time"
"github.com/sourcegraph/conc/pool"
"github.com/santhosh-tekuri/jsonschema/v5"
"github.com/tidwall/gjson"
"github.com/tidwall/sjson"
)
func panic_on_err(err error, action string) {
if err != nil {
panic(fmt.Sprintf("failed with '%s' while '%s'", err.Error(), action))
}
}
type Schema struct {
Label string
Path string
Schema *jsonschema.Schema
}
func configure_validator(schema_root string) map[string]Schema {
compiler := jsonschema.NewCompiler()
compiler.Draft = jsonschema.Draft4
schema_file_list := map[string]string{
"POA": path.Join(schema_root, "/dist/model/article-poa.v3.json"),
"VOR": path.Join(schema_root, "/dist/model/article-vor.v7.json"),
}
schema_map := map[string]Schema{}
for label, path := range schema_file_list {
file_bytes, err := os.ReadFile(path)
panic_on_err(err, fmt.Sprintf("reading '%s' schema file: %s", label, path))
if label == "VOR" {
// patch ISBN regex as it can't be compiled in Go.
// todo: this needs a fix upstream.
// https://json-schema.org/understanding-json-schema/reference/regular_expressions.html
// https://github.com/santhosh-tekuri/jsonschema/issues/113
find := "allOf.2.properties.references.items.definitions.book.properties.isbn.pattern"
replace := "^.+$"
file_bytes, err = sjson.SetBytes(file_bytes, find, replace)
panic_on_err(err, fmt.Sprintf("patching ISBN in '%s' schema: %s", label, path))
}
err = compiler.AddResource(label, bytes.NewReader(file_bytes))
panic_on_err(err, "adding schema to compiler: "+label)
schema, err := compiler.Compile(label)
panic_on_err(err, "compiling schema: "+label)
schema_map[label] = Schema{
Label: label,
Path: path,
Schema: schema,
}
}
return schema_map
}
// ---
func read_article_data(article_json_path string) (string, interface{}) {
article_json_bytes, err := os.ReadFile(article_json_path)
panic_on_err(err, "reading bytes from path: "+article_json_path)
result := gjson.GetBytes(article_json_bytes, "article.status")
if !result.Exists() {
panic("'article.status' field in article data not found: " + article_json_path)
}
schema_key := strings.ToUpper(result.String()) // "poa" => "POA"
// article-json contains 'journal', 'snippet' and 'article' sections.
// extract just the 'article' from the article data.
result = gjson.GetBytes(article_json_bytes, "article")
if !result.Exists() {
panic("'article' field in article data not found: " + article_json_path)
}
// what is happening here?? the slice of matching bytes are extracted from
// the article-json, skipping a conversion of `result` to a string then back
// to bytes for unmarshalling. if only a `result.Bytes()` existed :(
// - https://github.com/tidwall/gjson#user-content-working-with-bytes
var raw []byte
if result.Index > 0 {
raw = article_json_bytes[result.Index : result.Index+len(result.Raw)]
} else {
raw = []byte(result.Raw)
}
// convert the article-json data into a simple go datatype
var article interface{}
err = json.Unmarshal(raw, &article)
panic_on_err(err, "unmarshalling article section bytes")
return schema_key, article
}
func validate(schema Schema, article interface{}) (time.Duration, error) {
start := time.Now()
err := schema.Schema.Validate(article)
end := time.Now()
elapsed := end.Sub(start)
return elapsed, err
}
func path_exists(path string) bool {
_, err := os.Stat(path)
return !errors.Is(err, os.ErrNotExist)
}
func path_is_dir(path string) bool {
fi, err := os.Lstat(path)
panic_on_err(err, "reading path: "+path)
return fi.Mode().IsDir()
}
type Result struct {
Type string
FileName string
Elapsed int64
Success bool
// these can get large. I recommend not accumulating them for large jobs with many problems.
Error error
}
func validate_article(schema_map map[string]Schema, article_json_path string, capture_error bool) Result {
// read article data and determine schema to use
schema_key, article := read_article_data(article_json_path)
schema, present := schema_map[schema_key]
if !present {
panic("schema not found: " + schema_key)
}
// validate!
elapsed, err := validate(schema, article)
r := Result{
Type: schema_key, // POA or VOR
FileName: filepath.Base(article_json_path),
Elapsed: elapsed.Milliseconds(),
Success: err == nil,
}
if capture_error && err != nil {
r.Error = err
}
return r
}
func (r Result) String() string {
// "VOR valid in 2.6ms: elife-09560-v1.xml.json"
// "POA invalid in 123.4ms: elife-09560-v1.xml.json"
msg := "%s %s in\t%4dms: %s"
if r.Success {
return fmt.Sprintf(msg, r.Type, "valid", r.Elapsed, r.FileName)
}
return fmt.Sprintf(msg, r.Type, "invalid", r.Elapsed, r.FileName)
}
func format_ms(ms int64) string {
elapsed_str := fmt.Sprintf("%dms", ms)
if ms > 1000 {
// seconds
elapsed_str = fmt.Sprintf("%ds", ms/1000)
} else if ms > 60000 {
// minutes
elapsed_str = fmt.Sprintf("%dm", (ms/1000)/60)
}
return elapsed_str
}
func short_validation_error(err error) {
fmt.Printf("%v\n", err)
}
func long_validation_error(err error) {
fmt.Printf("%#v\n", err)
}
func die(b bool, msg string) {
if b {
fmt.Println(msg)
os.Exit(1)
}
}
func main() {
var err error
args := os.Args[1:]
// required first argument is path to an xml document or a directory of xml.
die(len(args) < 1, "first argument must be the path to api-raml schema root.")
schema_root := args[0]
die(!path_exists(schema_root), "path to api-raml directory does not exist")
schema_map := configure_validator(schema_root)
die(len(args) < 2, "second argument must be the path to a article-json file or directory.")
input_path := args[1]
die(!path_exists(input_path), "input path does not exist")
// optional second argument is sample size.
sample_size := -1
if len(args) > 2 {
sample_size, err = strconv.Atoi(args[2])
die(err != nil, "second argument (article sample size) is not an integer. use -1 for 'all' articles (default).")
die(sample_size <= 0 && sample_size != -1, "second argument must be -1 or a positive integer.")
}
num_workers := runtime.NumCPU()
if len(args) > 3 {
num_workers, err = strconv.Atoi(args[3])
die(err != nil, "third argument (number of workers) is not an integer.")
}
if path_is_dir(input_path) {
// validate many
path_list, err := os.ReadDir(input_path)
panic_on_err(err, "reading contents of directory: "+input_path)
if sample_size == -1 || sample_size > len(path_list) {
// validate all files in dir
sample_size = len(path_list)
}
// sort files smallest to highest (asc).
// order of file listings is never guaranteed so sort before we take a sample.
// note! filename output happens in parallel so it may appear unordered.
sort.Slice(path_list, func(a, b int) bool {
return path_list[a].Name() < path_list[b].Name()
})
// filter any directories
file_list := []string{}
for i := 0; i < sample_size; i++ {
path := path_list[i]
if path.IsDir() {
continue
}
file_list = append(file_list, filepath.Join(input_path, path.Name()))
}
// reverse the sample (desc) so we do a natural 'count down' to the lowest article.
slices.Reverse(file_list)
// ensure the correct sample size is reported after filtering out directories.
sample_size = len(file_list)
capture_errors := false
worker_pool := pool.NewWithResults[Result]().WithMaxGoroutines(num_workers)
start_time := time.Now()
for _, file := range file_list {
file := file
worker_pool.Go(func() Result {
result := validate_article(schema_map, file, capture_errors)
println(result.String())
return result
})
}
result_list := worker_pool.Wait()
end_time := time.Now()
wall_time_ms := end_time.Sub(start_time).Milliseconds()
var cpu_time_ms int64
for _, result := range result_list {
cpu_time_ms = cpu_time_ms + result.Elapsed
}
failures := []Result{}
for _, result := range result_list {
if !result.Success {
failures = append(failures, result)
}
}
println("")
println(fmt.Sprintf("articles:%d, failures:%d, workers:%d, wall-time:%s, cpu-time:%s, average:%dms", sample_size, len(failures), num_workers, format_ms(wall_time_ms), format_ms(cpu_time_ms), (cpu_time_ms / int64(sample_size))))
if len(failures) > 0 {
println("")
for _, result := range failures {
println(result.String())
if capture_errors {
short_validation_error(result.Error)
println("---")
}
}
os.Exit(1)
}
} else {
// validate single
capture_errors := true
result := validate_article(schema_map, input_path, capture_errors)
if !result.Success {
long_validation_error(result.Error)
os.Exit(1)
}
}
}