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challenge_configuration.yaml
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challenge_long_name: NEON Ecological Forecasting Challenge
project_id: neon4cast
endpoint: sdsc.osn.xsede.org
noaa_endpoint: sdsc.osn.xsede.org
submissions_endpoint: submit.ecoforecast.org
scores_bucket: bio230014-bucket01/challenges/scores
forecasts_bucket: bio230014-bucket01/challenges/forecasts
summaries_bucket: bio230014-bucket01/challenges/forecasts/summaries
submissions_bucket: submissions
inventory_bucket: bio230014-bucket01/challenges/inventory
noaa_forecast_bucket: bio230014-bucket01/neon4cast-drivers/noaa/gefs-v12
prov_bucket: bio230014-bucket01/challenges/prov
targets_bucket: bio230014-bucket01/challenges/targets
archive_bucket: bio230014-bucket01/challenges/archive
model_metadata_bucket: bio230014-bucket01/challenges/metadata/model_id
model_metadata_gsheet: https://docs.google.com/spreadsheets/d/1f177dpaxLzc4UuQ4_SJV9JWIbQPlilVnEztyvZE6aSU/edit?usp=sharing
example_model_id: example
site_path: 'catalog/sites'
site_table: neon4cast_field_site_metadata.csv
site_thumbnail: 'https://www.neonscience.org/sites/default/files/styles/max_2600x2600/public/2021-04/2021_04_graphic_Domain_Map_no-Titles-png.png?itok=7MsHPigZ'
site_thumbnail_title: "NEON Sites Map"
site_table_link: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/neon4cast_field_site_metadata.csv'
target_metadata_gsheet: https://docs.google.com/spreadsheets/d/10YTX9ae_C1rFdLgEDkUcCRCpUkVYv06leY01BtD1BgM/edit?usp=sharing
targets_thumbnail: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/neon_stream.jpg'
targets_thumbnail_title: 'Test Image'
targets_path: 'catalog/targets/'
challenge_url: https://projects.ecoforecast.org/neon4cast-ci
github_repo: eco4cast/neon4cast-ci
target_groups:
Aquatics:
targets_file: "https://data.ecoforecast.org/neon4cast-targets/aquatics/aquatics-targets.csv.gz"
Terrestrial:
targets_file: "https://data.ecoforecast.org/neon4cast-targets/terrestrial/terrestrial-targets.csv.gz"
Beetles:
targets_file: "https://data.ecoforecast.org/neon4cast-targets/beetles/beetles-targets.csv.gz"
Phenology:
targets_file: "https://data.ecoforecast.org/neon4cast-targets/phenology/phenology-targets.csv.gz"
Ticks:
targets_file: "https://data.ecoforecast.org/neon4cast-targets/ticks/ticks-targets.csv.gz"
noaa_forecast_groups: ['Pseudo','Stage1-stats','Stage1','Stage2','Stage3']
noaa_forecast_group_paths: ['pseudo','stage1-stats','stage1','stage2','stage3']
variable_groups:
Aquatics:
variable: ['oxygen','temperature','chla']
duration: ['P1D','P1D','P1D']
thumbnail_link: 'https://projects.ecoforecast.org/neon4cast-catalog/img/neon_buoy.jpg'
thumbnail_title: 'NEON Aquatics Buoy'
group_vars:
oxygen:
duration: "P1D"
temperature:
duration: 'P1D'
var_doi: "10.1002/ecs2.4686"
var_citation: "Dietze, M., R.Q. Thomas, J. Peters, C. Boettiger, A. Shiklomanov, and J. Ashander. 2023. A community convention for ecological forecasting: output files and metadata v1.0. Ecosphere 14: e4686 https://doi.org/10.1002/ecs2.4686"
chla:
duration: "P1D"
Terrestrial:
variable: ['nee','le','nee','le']
duration: ['P1D','P1D','PT30M','PT30M']
thumbnail_link: 'https://projects.ecoforecast.org/neon4cast-catalog/img/BONA_Twr.jpg'
thumbnail_title: 'NEON Field Tower'
group_vars:
nee:
duration: ["P1D", "PT30M"]
le:
duration: ["P1D", "PT30M"]
Phenology:
variable: ['gcc_90','rcc_90']
duration: ['P1D','P1D']
thumbnail_link: 'https://www.neonscience.org/sites/default/files/styles/max_1300x1300/public/image-content-images/_BFP8455.jpg'
thumbnail_title: 'Phenology Image'
group_vars:
gcc_90:
duration: "P1D"
var_doi: '10.1016/j.agrformet.2023.109810.'
var_citation: 'Kathryn I. Wheeler, Michael C. Dietze, David LeBauer, Jody A. Peters, Andrew D. Richardson, Arun A. Ross, R. Quinn Thomas,
Kai Zhu, Uttam Bhat, Stephan Munch, Raphaela Floreani Buzbee, Min Chen, Benjamin Goldstein, Jessica Guo, Dalei Hao, Chris Jones, Mira Kelly-Fair,
Haoran Liu, Charlotte Malmborg, Naresh Neupane, Debasmita Pal, Vaughn Shirey, Yiluan Song, McKalee Steen, Eric A. Vance, Whitney M. Woelmer,
Jacob H. Wynne, Luke Zachmann, Predicting spring phenology in deciduous broadleaf forests: NEON phenology forecasting community challenge,
Agricultural and Forest Meteorology, Volume 345, 2024'
rcc_90:
duration: 'P1D'
Beetles:
variable: ['abundance', 'richness']
duration: ['P1W','P1W']
thumbnail_link: 'https://www.neonscience.org/sites/default/files/styles/max_width_1170px/public/image-content-images/Beetles_pinned.jpg'
thumbnail_title: 'Beetle Image'
group_vars:
abundance:
duration: "P1W"
richness:
duration: 'P1W'
Ticks:
variable: ['amblyomma_americanum']
duration: ['P1W']
thumbnail_link: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/tick_drag.jpg'
thumbnail_title: 'NEON Ticks'
group_vars:
amblyomma_americanum:
duration: "P1W"
catalog_config:
about_string: 'https://projects.ecoforecast.org/neon4cast-docs/'
about_title: 'NEON Ecological Forecasting Challenge Documentation'
scores_thumbnail: "https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/52760199990_d1a0f154fe_c.jpg"
scores_thumbnail_title: "NEON Buoy Image"
forecasts_thumbnail: "https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/51629805865_0ef01ffbbc_c.jpg"
forecasts_thumbnail_title: "NEON Buoy Image"
forecast_path: 'catalog/forecasts'
scores_path: 'catalog/scores'
summaries_path: 'catalog/summaries'
summaries_thumbnail: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/neon_desert.jpg'
summaries_thumbnail_title: "NEON Image"
inventory_path: 'catalog/inventory'
inventory_thumbnail: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/neon_forest.jpg'
inventory_thumbnail_title: "NEON Image"
noaa_path: 'catalog/noaa_forecasts/'
noaa_thumbnail: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/catalog/thumbnail_plots/neon_wetland.jpg'
noaa_thumbnail_title: "NEON Image"
aws_download_path_forecasts: 'bio230014-bucket01/challenges/forecasts/bundled-parquet/'
aws_download_path_scores: 'bio230014-bucket01/challenges/scores/bundled-parquet/'
aws_download_path_summaries: 'bio230014-bucket01/challenges/forecasts/bundled-summaries/'
host_url: "www.neon4cast.org"
host_name: "Ecoforecast Challenge"
bbox:
max_lat: 71.2824
min_lat: 17.9696
max_lon: -66.7987
min_lon: -156.6194
site_type: 'MultiPoint'
base_image_path: 'https://data.ecoforecast.org/neon4cast-catalog'
citation_doi_link: "https://doi.org/10.1002/fee.2616"
citation_doi: "10.1002/fee.2616"
citation_text: "Thomas, R.Q., C. Boettiger, C.C. Carey, M.C. Dietze, L.R. Johnson, M.A. Kenney, J.S. Mclachlan, J.A. Peters, E.R. Sokol, J.F. Weltzin, A. Willson, W.M. Woelmer, and Challenge Contributors. 2023. The NEON Ecological Forecasting Challenge. Frontiers in Ecology and Environment 21: 112-113."
dashboard_url: "https://projects.ecoforecast.org/neon4cast-docs/"
dashboard_title: "NEON Forecast Challenge Dashboard"
site_metadata_url: 'https://raw.githubusercontent.com/eco4cast/neon4cast-ci/main/neon4cast_field_site_metadata.csv'