From 86bf3d2768e0404dbc1c06149200cba0c143ea2a Mon Sep 17 00:00:00 2001 From: HajkD Date: Wed, 16 Feb 2022 09:32:19 +0100 Subject: [PATCH] add references --- README.md | 21 ++++++++++++++++++--- docs/index.html | 9 ++++++++- docs/pkgdown.yml | 2 +- 3 files changed, 27 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 6d0424e..c01a564 100644 --- a/README.md +++ b/README.md @@ -190,7 +190,11 @@ The current status of the package as well as a detailed history of the functiona R Giné, J Capellades, JM Badia et al. - __Nature Methods__, 2021 > > - __The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime__ KA Otte, V Nolte, F Mallard et al. - __Genome Biology__, 2021 +> +> - __The Tug1 lncRNA locus is essential for male fertility__ JP Lewandowski et al. - __Genome Biology__, 2020 > +> - __Resolving the structure of phage–bacteria interactions in the context of natural diversity__ KM Kauffman, WK Chang, JM Brown et al. - __Nature Communications__, 2022 +> > - __Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations__ M Stražar, GS Temba, H Vlamakis et al. - __Nature Communications__, 2021 > @@ -203,8 +207,6 @@ C Coupé, YM Oh, D Dediu, F Pellegrino - __Science Advances__, 2019 > > - __Loss of adaptive capacity in asthmatic patients revealed by biomarker fluctuation dynamics after rhinovirus challenge__ A Sinha et al. - __eLife__, 2019 > -> - __The Tug1 lncRNA locus is essential for male fertility__ JP Lewandowski et al. - __Genome Biology__, 2020 -> > - __Sex and hatching order modulate the association between MHC‐II diversity and fitness in early‐life stages of a wild seabird__ M Pineaux et al - __Molecular Ecology__, 2020 > @@ -220,6 +222,10 @@ EF Davis-Marcisak, TD Sherman et al. - __Cancer research__, 2019 > > - __Combined TCR Repertoire Profiles and Blood Cell Phenotypes Predict Melanoma Patient Response to Personalized Neoantigen Therapy plus Anti-PD-1__ A Poran et al. - __Cell Reports Medicine__, 2020 > +> - __Identification of a glioma functional network from gene fitness data using machine learning__ C Xiang, X Liu, D Zhou, Y Zhou, X Wang, F Chen - __Journal of Cellular and Molecular Medicine__, 2022 +> +> - __Prediction of New Risk Genes and Potential Drugs for Rheumatoid Arthritis from Multiomics Data__ AM Birga, L Ren, H Luo, Y Zhang, J Huang - __Computational and Mathematical Methods in Medicine__, 2022 +> > - __Phenotyping of acute and persistent COVID-19 features in the outpatient setting: exploratory analysis of an international cross-sectional online survey__ S Sahanic, P Tymoszuk, D Ausserhofer et al. - __medRxiv__, 2021 > > - __A two-part evaluation approach for measuring the usability and user experience of an Augmented Reality-based assistance system to support the temporal coordination of spatially dispersed teams__ L Thomaschewski, B Weyers, A Kluge - __Cognitive Systems Research__, 2021 @@ -227,6 +233,8 @@ EF Davis-Marcisak, TD Sherman et al. - __Cancer research__, 2019 > - __SEDE-GPS: socio-economic data enrichment based on GPS information__ T Sperlea, S Füser, J Boenigk, D Heider - __BMC bioinformatics__, 2018 > +> - __Spatial and molecular anatomy of germ layers in the gastrulating primate embryo__ G Cui, S Feng, Y Yan, L Wang, X He, X Li, et al. - __bioRxiv__, 2022 +> > - __Evacuees and Migrants Exhibit Different Migration Systems after the Great East Japan Earthquake and Tsunami__ M Hauer, S Holloway, T Oda – 2019 > @@ -312,7 +320,14 @@ S Biswas, S Saha, S Bandyopadhyay, M Bhattacharyya - __bioRxiv__, 2020 > - __Innovative activity of Polish enterprises–a strategic aspect. The similarity of NACE divisions__ E Bielińska-Dusza, M Hamerska - __Journal of Entrepreneurship, Management and innovation__, 2021 > > - __Multi-classifier majority voting analyses in provenance studies on iron artefacts__ G Żabiński, J Gramacki et al.- __Journal of Archaeological Science__, 2020 - +> +> - __Unraveling the record of a tropical continental Cretaceous-Paleogene boundary in northern Colombia, South America__ F de la Parra, C Jaramillo, P Kaskes et al. - __Journal of South American Earth Sciences__, 2022 +> +> - __A roadmap to reconstructing muscle architecture from CT data__ +J Katzke, P Puchenkov, H Stark, EP Economo - __Integrative Organismal Biology__, 2022 +> +> - __Pandemonium: a clustering tool to partition parameter space—application to the B anomalies__ U Laa, G Valencia - __The European Physical Journal Plus__, 2022 +> ## Discussions and Bug Reports diff --git a/docs/index.html b/docs/index.html index 9a1c7a9..c8f5739 100644 --- a/docs/index.html +++ b/docs/index.html @@ -280,21 +280,25 @@

  • Extinction at the end-Cretaceous and the origin of modern Neotropical rainforests MR Carvalho, C Jaramillo et al. - Science, 2021

  • HERMES: a molecular-formula-oriented method to target the metabolome R Giné, J Capellades, JM Badia et al. - Nature Methods, 2021

  • The genetic architecture of temperature adaptation is shaped by population ancestry and not by selection regime KA Otte, V Nolte, F Mallard et al. - Genome Biology, 2021

    • +

  • The Tug1 lncRNA locus is essential for male fertility JP Lewandowski et al. - Genome Biology, 2020

    • +

  • Resolving the structure of phage–bacteria interactions in the context of natural diversity KM Kauffman, WK Chang, JM Brown et al. - Nature Communications, 2022

  • Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations M Stražar, GS Temba, H Vlamakis et al. - Nature Communications, 2021

  • Aging, inflammation and DNA damage in the somatic testicular niche with idiopathic germ cell aplasia M Alfano, AS Tascini, F Pederzoli et al. - Nature communications, 2021

  • Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation A Subramanian et al. - Nature Communications, 2019

  • Different languages, similar encoding efficiency: Comparable information rates across the human communicative niche C Coupé, YM Oh, D Dediu, F Pellegrino - Science Advances, 2019

  • Loss of adaptive capacity in asthmatic patients revealed by biomarker fluctuation dynamics after rhinovirus challenge A Sinha et al. - eLife, 2019

    • -

  • The Tug1 lncRNA locus is essential for male fertility JP Lewandowski et al. - Genome Biology, 2020

  • Sex and hatching order modulate the association between MHC‐II diversity and fitness in early‐life stages of a wild seabird M Pineaux et al - Molecular Ecology, 2020

  • How the Choice of Distance Measure Influences the Detection of Prior-Data Conflict K Lek, R Van De Schoot - Entropy, 2019

  • Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data EF Davis-Marcisak, TD Sherman et al. - Cancer research, 2019

  • Multi-Omics Investigation of Innate Navitoclax Resistance in Triple-Negative Breast Cancer Cells M Marczyk et al. - Cancers, 2020

  • Impact of Gut Microbiome on Hypertensive Patients with Low-Salt Intake: Shika Study Results S Nagase et al. - Frontiers in Medicine, 2020

  • Combined TCR Repertoire Profiles and Blood Cell Phenotypes Predict Melanoma Patient Response to Personalized Neoantigen Therapy plus Anti-PD-1 A Poran et al. - Cell Reports Medicine, 2020

    • +

  • Identification of a glioma functional network from gene fitness data using machine learning C Xiang, X Liu, D Zhou, Y Zhou, X Wang, F Chen - Journal of Cellular and Molecular Medicine, 2022

    • +

  • Prediction of New Risk Genes and Potential Drugs for Rheumatoid Arthritis from Multiomics Data AM Birga, L Ren, H Luo, Y Zhang, J Huang - Computational and Mathematical Methods in Medicine, 2022

  • Phenotyping of acute and persistent COVID-19 features in the outpatient setting: exploratory analysis of an international cross-sectional online survey S Sahanic, P Tymoszuk, D Ausserhofer et al. - medRxiv, 2021

  • A two-part evaluation approach for measuring the usability and user experience of an Augmented Reality-based assistance system to support the temporal coordination of spatially dispersed teams L Thomaschewski, B Weyers, A Kluge - Cognitive Systems Research, 2021

  • SEDE-GPS: socio-economic data enrichment based on GPS information T Sperlea, S Füser, J Boenigk, D Heider - BMC bioinformatics, 2018

    • +

  • Spatial and molecular anatomy of germ layers in the gastrulating primate embryo G Cui, S Feng, Y Yan, L Wang, X He, X Li, et al. - bioRxiv, 2022

  • Evacuees and Migrants Exhibit Different Migration Systems after the Great East Japan Earthquake and Tsunami M Hauer, S Holloway, T Oda – 2019

  • Robust comparison of similarity measures in analogy based software effort estimation P Phannachitta - 11th International Conference on Software, 2017

  • RUNIMC - An R-based package for imaging mass cytometry data analysis and pipeline validation L Dolcetti, PR Barber, G Weitsman, S Thavarajet al. - bioRxiv, 2021

    • @@ -326,6 +330,9 @@

  • New effective spectral matching measures for hyperspectral data analysis C Kumar, S Chatterjee, T Oommen, A Guha - International Journal of Remote Sensing, 2021

  • Innovative activity of Polish enterprises–a strategic aspect. The similarity of NACE divisions E Bielińska-Dusza, M Hamerska - Journal of Entrepreneurship, Management and innovation, 2021

  • Multi-classifier majority voting analyses in provenance studies on iron artefacts G Żabiński, J Gramacki et al.- Journal of Archaeological Science, 2020

    • +

  • Unraveling the record of a tropical continental Cretaceous-Paleogene boundary in northern Colombia, South America F de la Parra, C Jaramillo, P Kaskes et al. - Journal of South American Earth Sciences, 2022

    • +

  • A roadmap to reconstructing muscle architecture from CT data J Katzke, P Puchenkov, H Stark, EP Economo - Integrative Organismal Biology, 2022

    • +

  • Pandemonium: a clustering tool to partition parameter space—application to the B anomalies U Laa, G Valencia - The European Physical Journal Plus, 2022

    • diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index cebe224..c2c45ba 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -6,5 +6,5 @@ articles: Information_Theory: Information_Theory.html Introduction: Introduction.html Many_Distances: Many_Distances.html -last_built: 2022-02-14T15:20Z +last_built: 2022-02-16T08:31Z