NAMESPACE

# Generated by roxygen2: do not edit by hand

export(blast2bed)
export(blast_best_hit)
export(blast_best_reciprocal_hit)
export(blast_genomes)
export(blast_nucleotide_to_genomes)
export(blast_nucleotide_to_nucleotide)
export(blast_nucleotide_to_protein)
export(blast_protein_to_nr_database)
export(blast_protein_to_nucleotide)
export(blast_protein_to_protein)
export(blast_protein_to_proteomes)
export(blast_repbase)
export(blast_rpsblast)
export(detect_homologs_cds_to_cds)
export(detect_homologs_proteome_to_proteome)
export(extract_hit_seqs_from_genomes)
export(extract_promotor_seqs_from_genome)
export(extract_random_seqs_from_genome)
export(extract_random_seqs_from_multiple_genomes)
export(extract_upstream_promotor_seqs)
export(file_contains_aa)
export(file_contains_dna)
export(filter_best_hits)
export(filter_homologs_core_set)
export(filter_homologs_core_set_n_species)
export(gg_blast_hits)
export(gg_blast_hits_summary)
export(gg_hits_boxplot)
export(gg_homologs_one_to_one)
export(gg_pairwise_orthologs_line)
export(gg_species_dnds_blast_tbl)
export(gg_species_feature_blast_tbl)
export(gg_species_promotor_dist_blast_tbl)
export(list_outformats)
export(motif_compare)
export(motif_compare_multi)
export(motif_compare_multi_promotor_seqs)
export(motif_count)
export(motif_count_matrix)
export(motif_enrichment)
export(read_blast)
export(read_blast_databases)