seuratToGiottoV5

[DR-J-WAYEN]

Hi

I'm currently working with Visium HD data which I have processed and annotated in Seurat. I'd like to move to Giotto for further analyses and have been encountering issues using the seuratToGiottoV5() function and haven't been able to.

I am looking for help in managing to convert a seurat object to a giotto object.

Is there any help of advice available for this, please?

After importing my seurat object , I've used:

objectG <- seuratToGiottoV5(sobject = object, subcellular_assay = "Spatial.008um",
                            dim_reduction=c("full.pca.sketch","full.umap.sketch"),
                            spatial_assay = "Spatial.008um",verbose = T)

and I get the error:

Error in seuratToGiottoV5(sobject = object, subcellular_assay = "Spatial.008um",  : 
  object 'polygon_list' not found

[iqraAmin]

Hi @DR-J-WAYEN, thank you for reporting the issue. It has been fixed, and the function will soon be available for use.