We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Creating Giotto Image:
> visium_data <- createGiottoVisiumObject(visium_dir = NULL, + h5_visium_path = file.path(file_path, "raw_feature_bc_matrix.h5"), + h5_tissue_positions_path = file.path(file_path, "spatial", "tissue_positions_list.csv"), + h5_image_png_path = file.path(file_path, "spatial", "tissue_lowres_image.png"), + h5_json_scalefactors_path = file.path(file_path, "spatial", "scalefactors_json.json"), + png_name = "tissue_lowres_image.png", + instructions = instrs) A path to an .h5 10X file was provided and will be used - found image - found scalefactors. attempting automatic alignment for the 'lowres' image
Updating Giotto Image:
> visium_data <- updateGiottoImage(visium_data, image_name = 'image', + xmax_adj = xmax_adj, xmin_adj = xmin_adj, + ymax_adj = ymax_adj, ymin_adj = ymin_adj) Error in get_giottoImage_MG(gobject = gobject, name = image_name) : No giottoImages have been found > showGiottoImageNames(visium_data) Image type: largeImage --> Name: image
Error:
Error in get_giottoImage_MG(gobject = gobject, name = image_name) : No giottoImages have been found
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Creating Giotto Image:
Updating Giotto Image:
Error:
The text was updated successfully, but these errors were encountered: