From f331162a2db9ca0478e3fa5051981bbf3011fe2a Mon Sep 17 00:00:00 2001 From: dpryan79 Date: Thu, 30 Jan 2020 14:14:01 +0100 Subject: [PATCH] Bump version to 0.5.0 --- CHANGELOG.md | 8 ++++++-- Makefile | 2 +- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a608d7b..1a95f1e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,9 @@ +Version 0.5.0: + + * Fixed an issue with the `--cytosine_report` option where the reported chromosome name could be wrong IF the input BAM files were very sparse and multiple threads were used. (issue #88) + * libBigWig is now an external dependency as it's needed for handling the "binary bismap format" + * Added support for blacklisting reads according to a "binary bismap file". See [here](https://github.com/dpryan79/MethylDackel/blob/master/BBM_Specification.md) for details. Code for this was contributed by @valiec and @bwlang at New England Biolabs. + Version 0.4.0: * Switched to an external htslib. It is currently compatible with htslib versions 1.4 through 1.9 (the latest one at the time of release). @@ -5,8 +11,6 @@ Version 0.4.0: * Removed the `--maxDepth` option, it's not longer required. * Fixed issue #58, the `--keepDupes` flag now changes `--ignoreFlags`. * Fixed issue #59, the confidence intervals should no longer extend outside of [0, 1]. - * libBigWig is now an external dependency as it's needed for handling the "binary bismap format" - * Added support for blacklisting reads according to a "binary bismap file". See [here](https://github.com/dpryan79/MethylDackel/blob/master/BBM_Specification.md) for details. Code for this was contributed by @valiec and @bwlang at New England Biolabs. Version 0.3.0: diff --git a/Makefile b/Makefile index 17e34b2..1fc8815 100644 --- a/Makefile +++ b/Makefile @@ -11,7 +11,7 @@ CFLAGS ?= -Wall -g -O3 -pthread all: MethylDackel OBJS = common.o bed.o svg.o pileup.o extract.o MBias.o mergeContext.o perRead.o -VERSION = 0.4.0 +VERSION = 0.5.0 version.h: echo '#define VERSION "$(VERSION)"' > $@