$ wdltools --version
wdlTools 0.17.8
$ cat test.wdl
version 1.0
workflow my_workflow {
input { String message }
call display { input: message=message }
}
task display {
input { String message }
command { printf '~{message}' }
}
# comment
$ wdltools check test.wdl
$ wdltools format test.wdl
[error] Command scallop failed
java.lang.IllegalArgumentException: requirement failed
at scala.Predef$.require(Predef.scala:324)
at wdlTools.generators.code.WdlFormatter$LineFormatter.endLine(WdlFormatter.scala:205)
at wdlTools.generators.code.WdlFormatter$LineFormatter.maybeAppendFullLineComments(WdlFormatter.scala:311)
at wdlTools.generators.code.WdlFormatter$LineFormatter.endSection(WdlFormatter.scala:173)
at wdlTools.generators.code.WdlFormatter$DocumentSections.format(WdlFormatter.scala:1885)
at wdlTools.generators.code.WdlFormatter.formatElement(WdlFormatter.scala:1898)
at wdlTools.generators.code.WdlFormatter.formatDocument(WdlFormatter.scala:1907)
at wdlTools.generators.code.WdlFormatter.$anonfun$formatDocuments$1(WdlFormatter.scala:1914)
at wdlTools.syntax.WdlParser$Walker.addDocument$1(WdlParser.scala:66)
at wdlTools.syntax.WdlParser$Walker.walk(WdlParser.scala:80)
at wdlTools.generators.code.WdlFormatter.formatDocuments(WdlFormatter.scala:1913)
at wdlTools.cli.Format.apply(Format.scala:15)
at wdlTools.cli.Main$.runCommand(Main.scala:36)
at wdlTools.cli.Main$.delayedEndpoint$wdlTools$cli$Main$1(Main.scala:48)
at wdlTools.cli.Main$delayedInit$body.apply(Main.scala:12)
at scala.Function0.apply$mcV$sp(Function0.scala:39)
at scala.Function0.apply$mcV$sp$(Function0.scala:39)
at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:17)
at scala.App.$anonfun$main$1(App.scala:76)
at scala.App.$anonfun$main$1$adapted(App.scala:76)
at scala.collection.IterableOnceOps.foreach(IterableOnce.scala:563)
at scala.collection.IterableOnceOps.foreach$(IterableOnce.scala:561)
at scala.collection.AbstractIterable.foreach(Iterable.scala:926)
at scala.App.main(App.scala:76)
at scala.App.main$(App.scala:74)
at wdlTools.cli.Main$.main(Main.scala:12)
at wdlTools.cli.Main.main(Main.scala)
$
If the comment line is removed, then the format command does not throw an exception and shows the reformated file as expected.
$ wdltools --version wdlTools 0.17.8 $ cat test.wdl version 1.0 workflow my_workflow { input { String message } call display { input: message=message } } task display { input { String message } command { printf '~{message}' } } # comment $ wdltools check test.wdl $ wdltools format test.wdl [error] Command scallop failed java.lang.IllegalArgumentException: requirement failed at scala.Predef$.require(Predef.scala:324) at wdlTools.generators.code.WdlFormatter$LineFormatter.endLine(WdlFormatter.scala:205) at wdlTools.generators.code.WdlFormatter$LineFormatter.maybeAppendFullLineComments(WdlFormatter.scala:311) at wdlTools.generators.code.WdlFormatter$LineFormatter.endSection(WdlFormatter.scala:173) at wdlTools.generators.code.WdlFormatter$DocumentSections.format(WdlFormatter.scala:1885) at wdlTools.generators.code.WdlFormatter.formatElement(WdlFormatter.scala:1898) at wdlTools.generators.code.WdlFormatter.formatDocument(WdlFormatter.scala:1907) at wdlTools.generators.code.WdlFormatter.$anonfun$formatDocuments$1(WdlFormatter.scala:1914) at wdlTools.syntax.WdlParser$Walker.addDocument$1(WdlParser.scala:66) at wdlTools.syntax.WdlParser$Walker.walk(WdlParser.scala:80) at wdlTools.generators.code.WdlFormatter.formatDocuments(WdlFormatter.scala:1913) at wdlTools.cli.Format.apply(Format.scala:15) at wdlTools.cli.Main$.runCommand(Main.scala:36) at wdlTools.cli.Main$.delayedEndpoint$wdlTools$cli$Main$1(Main.scala:48) at wdlTools.cli.Main$delayedInit$body.apply(Main.scala:12) at scala.Function0.apply$mcV$sp(Function0.scala:39) at scala.Function0.apply$mcV$sp$(Function0.scala:39) at scala.runtime.AbstractFunction0.apply$mcV$sp(AbstractFunction0.scala:17) at scala.App.$anonfun$main$1(App.scala:76) at scala.App.$anonfun$main$1$adapted(App.scala:76) at scala.collection.IterableOnceOps.foreach(IterableOnce.scala:563) at scala.collection.IterableOnceOps.foreach$(IterableOnce.scala:561) at scala.collection.AbstractIterable.foreach(Iterable.scala:926) at scala.App.main(App.scala:76) at scala.App.main$(App.scala:74) at wdlTools.cli.Main$.main(Main.scala:12) at wdlTools.cli.Main.main(Main.scala) $If the comment line is removed, then the format command does not throw an exception and shows the reformated file as expected.