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Welcome to deepTools GitHub repository! Before opening the issue please check that the following requirements are met :
Search whether this issue (or a similar issue) has been solved before using the search tab above. Link the previous issue if appropriate below.
Paste your deepTools version (deeptools --version) and your python version (python --version) below.
deeptools --version
python --version
Paste the full deepTools command that produces the issue below (ignore if you simply spotted the issue in the code/documentation).
Paste the output printed on screen from the command that produces the issue below (ignore if you simply spotted the issue in the code/documentation).
computeMatrix reference-point --referencePoint TSS -b 3000 -a 3000 -R {input.bed} -S {input.bigwig} --binSize 50 -o {output} --outFileSortedRegions {params.dir1} \
plotHeatmap -m {input} -out {output} --interpolationMethod auto --plotTitle {params} --colorList 'yellow, red' 'green, blue' \
plotProfile -m {input} -out {output} --plotTitle {params} \
The text was updated successfully, but these errors were encountered:
@WardDeb
Sorry, something went wrong.
just guessing, but maybe you have regions with extreme outlier bins that drive the average up. try to just plot the top50 regions.
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Welcome to deepTools GitHub repository! Before opening the issue please check
that the following requirements are met :
Search whether this issue (or a similar issue) has been solved before
using the search tab above. Link the previous issue if appropriate below.
Paste your deepTools version (
deeptools --version
) and your pythonversion (
python --version
) below.Paste the full deepTools command that produces the issue below
(ignore if you simply spotted the issue in the code/documentation).
Paste the output printed on screen from the command that produces the issue
below (ignore if you simply spotted the issue in the code/documentation).
computeMatrix reference-point
--referencePoint TSS
-b 3000
-a 3000
-R {input.bed}
-S {input.bigwig}
--binSize 50
-o {output}
--outFileSortedRegions {params.dir1} \
plotHeatmap
-m {input}
-out {output}
--interpolationMethod auto
--plotTitle {params}
--colorList 'yellow, red' 'green, blue' \
plotProfile
-m {input}
-out {output}
--plotTitle {params} \
The text was updated successfully, but these errors were encountered: