no more 2s, entrypoints point to new execs

Author: WardDeb

pyproject.toml

@@ -62,20 +62,20 @@ repository = "https://github.com/deeptools/deepTools"
 packages = ["deeptools"]
 
 [project.scripts]
-alignmentSieve = "deeptools.alignmentSieve:main"
-bamCompare = "deeptools.bamCompare:main"
-bamCoverage = "deeptools.bamCoverage:main"
+#alignmentSieve = "deeptools.alignmentSieve:main"
+#bamCompare = "deeptools.bamCompare:main"
+#bamCoverage = "deeptools.bamCoverage:main"
 bamPEFragmentSize = "deeptools.bamPEFragmentSize:main"
 bigwigAverage = "deeptools.bigwigAverage:main"
 bigwigCompare = "deeptools.bigwigCompare:main"
 computeGCBias = "deeptools.computeGCBias:main"
-computeMatrix = "deeptools.computeMatrix:main"
+#computeMatrix = "deeptools.computeMatrix:main"
 computeMatrixOperations = "deeptools.computeMatrixOperations:main"
 correctGCBias = "deeptools.correctGCBias:main"
 deeptools = "deeptools.deeptools_list_tools:main"
 estimateReadFiltering = "deeptools.estimateReadFiltering:main"
 estimateScaleFactor = "deeptools.estimateScaleFactor:main"
-multiBamSummary = "deeptools.multiBamSummary:main"
+#multiBamSummary = "deeptools.multiBamSummary:main"
 multiBigwigSummary = "deeptools.multiBigwigSummary:main"
 plotCorrelation = "deeptools.plotCorrelation:main"
 plotCoverage = "deeptools.plotCoverage:main"
@@ -84,8 +84,8 @@ plotFingerprint = "deeptools.plotFingerprint:main"
 plotHeatmap = "deeptools.plotHeatmap:main"
 plotPCA = "deeptools.plotPCA:main"
 plotProfile = "deeptools.plotProfile:main"
-bamCoverage2 = "deeptools.bamCoverage2:main"
-bamCompare2 = "deeptools.bamCompare2:main"
-computeMatrix2 = "deeptools.computeMatrix2:main"
-alignmentSieve2 = "deeptools.alignmentSieve2:main"
-multiBamSummary2 = "deeptools.multiBamSummary2:main"
+bamCoverage = "deeptools.bamCoverage2:main"
+bamCompare = "deeptools.bamCompare2:main"
+computeMatrix = "deeptools.computeMatrix2:main"
+alignmentSieve = "deeptools.alignmentSieve2:main"
+multiBamSummary = "deeptools.multiBamSummary2:main"