This error occurs when I am running dpgen in bohrium #1211
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Please contact bohrium directly. The error is not caused by the code. |
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The following error occurs when I run to phase 01.model devi,I don't know how to fix this.
error:
nohup: ignoring input
/opt/mamba/lib/python3.10/site-packages/gromacs/init.py:286: GromacsImportWarning: Some Gromacs commands were NOT found; maybe source GMXRC first? The following are missing:
['release']
warnings.warn("Some Gromacs commands were NOT found; "
INFO:dpgen:-------------------------iter.000000 task 01--------------------------
INFO:dpgen:-------------------------iter.000000 task 02--------------------------
INFO:dpgen:-------------------------iter.000000 task 03--------------------------
INFO:dpgen:-------------------------iter.000000 task 04--------------------------
Traceback (most recent call last):
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 287, in handle_unexpected_submission_state
job.handle_unexpected_job_state()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 755, in handle_unexpected_job_state
self.submit_job()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 802, in submit_job
job_id = self.machine.do_submit(self)
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dp_cloud_server.py", line 120, in do_submit
job_id, group_id = self.api.job_create(
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 227, in job_create
ret = self.post("/brm/v2/job/add", camel_data)
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 40, in post
return self._req(
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/dpcloudserver/client.py", line 85, in _req
raise RequestInfoException(resp_code, short_url, err)
dpdispatcher.dpcloudserver.client.RequestInfoException: (200, '/brm/v2/job/add', {'title': '请求错误', 'msg': 'sqlalchemy.exc.DataError: [9h9h] (1406, "Data too long for column 'out_files' at row 1")', 'reference': ''})
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/mamba/bin/dpgen", line 8, in
sys.exit(main())
File "/opt/mamba/lib/python3.10/site-packages/dpgen/main.py", line 185, in main
args.func(args)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 3642, in gen_run
run_iter (args.PARAM, args.MACHINE)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 3618, in run_iter
run_model_devi (ii, jdata, mdata)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 1556, in run_model_devi
run_md_model_devi(iter_index,jdata,mdata)
File "/opt/mamba/lib/python3.10/site-packages/dpgen/generator/run.py", line 1550, in run_md_model_devi
submission.run_submission()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 224, in run_submission
self.handle_unexpected_submission_state()
File "/opt/mamba/lib/python3.10/site-packages/dpdispatcher/submission.py", line 290, in handle_unexpected_submission_state
raise RuntimeError(
RuntimeError: Meet errors will handle unexpected submission state.
Debug information: remote_root==..
Debug information: submission_hash==5f74604d22a60f969008f382f68a69da22c02ec9.
Please check the dirs and scripts in remote_root. The job information mentioned above may help.
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